Stéphanie Bibert, Michel Jaquinod, Evelyne Concord, Christine Ebel, E.A. Hewat, Christophe Vanbelle, Pierre Legrand, Marianne Weidenhaupt, Thierry Vernet, Danielle Gulino-Debrac,
... using the computer program Protparam Tools of the Expasy server (www.expasy.ch/tools/protparam.html). Multimers of VE cadherin ... using the computer program Protparam Tools of the Expasy server (www.expasy.ch/tools/protparam.html).Experimental2-bMeasured by MALDI ... using the computer program Protparam Tools of the Expasy server (www.expasy.ch/tools/protparam.html).2-b Measured by ...
Tópico(s): Cancer-related gene regulation
2002 - Elsevier BV | Journal of Biological Chemistry
Christophe Beloin, Sorcha McKenna, Charles J. Dorman,
... The programs COILS, MULTICOIL, and PARCOIL from the Expasy Web server (www.expasy.ch/) were used to analyze the tertiary structure ... and ∼230 of VirB by the COILS program (Expasy; www.expasy.ch). In this domain, the ScanProsite program (Expasy) detected the pattern of an LZ motif commonly ... coiled-coil structure. Indeed, MULTICOIL and PARCOIL programs (Expasy) predicted positions ∼260 to 309 of VirB to ...
Tópico(s): Bacterial Genetics and Biotechnology
2002 - Elsevier BV | Journal of Biological Chemistry
Thibault Robin, Julien Mariethoz, Frédérique Lisacek,
... protected] initiative, Compozitor is hosted at https://glyconnect.expasy.org/compozitor/ where it can be run as ... protected] initiative, Compozitor is hosted at https://glyconnect.expasy.org/compozitor/ where it can be run as ... 32) Google Scholar), Compozitor is hosted on the ExPASy server (12Artimo P. Jonnalagedda M. Arnold K. Baratin ... Redaschi N. Rossier G. Xenarios I. Stockinger H. ExPASy: SIB bioinformatics resource portal.Nucleic Acids Res. 2012; ... SIB Swiss Institute of Bioinformatics at https://glyconnect.expasy.org/compozitor/ where it can be run as ...
Tópico(s): Carbohydrate Chemistry and Synthesis
2020 - Elsevier BV | Molecular & Cellular Proteomics
The ExPASy (the Expert Protein Analysis System) World Wide Web server (http://www.expasy.org), is provided as a service to the ... and analytical tools dedicated to proteins and proteomics. ExPASy databases include SWISS-PROT and TrEMBL, SWISS-2DPAGE, ... SWISS-PROT in order to enhance their predictions. ExPASy started to operate in 1993, as the first ...
Tópico(s): Machine Learning in Bioinformatics
2003 - Oxford University Press | Nucleic Acids Research
Jason M. Ridlon, Dae-Joong Kang, Phillip B. Hylemon,
... 1aValue derived from the Protparam program (http://www.expasy.ch/tools/protparam.html) using the deduced amino ... 0aValue derived from the Protparam program (http://www.expasy.ch/tools/protparam.html) using the deduced amino ... adolescentisND35aValue derived from the Protparam program (http://www.expasy.ch/tools/protparam.html) using the deduced amino ... 8aValue derived from the Protparam program (http://www.expasy.ch/tools/protparam.html) using the deduced amino ... Value derived from the Protparam program (http://www.expasy.ch/tools/protparam.html) using the deduced amino ...
Tópico(s): Probiotics and Fermented Foods
2005 - Elsevier BV | Journal of Lipid Research
Péter Tompa, Péter Buzder-Lantos, Ágnes Tantos, Attila E. Farkas, András Szilágyi, Zoltán Bánóczi, Ferenc Hudecz, Péter Friedrich,
... the Swiss-Prot and TrEMBL databases via the ExPASy molecular biology server (www.expasy.ch). The sequences were truncated to 50 amino ... normalizing matrices was taken from Swiss-Prot (us.expasy.org/sprot/). Sequential attributes were calculated or predicted ... nomi/nnpredict.html), and hydrophobicity with ProtScale (us.expasy.org/cgi-bin/protscale.pl). These servers are available via ExPASy. For strong and weak PEST regions detected by ...
Tópico(s): Signaling Pathways in Disease
2004 - Elsevier BV | Journal of Biological Chemistry
Huamin Zhang, Julian P. Whitelegge, William A. Cramer,
... P00455 and P16013 with modifications using PeptideMass (www.expasy.org) set to generate the average mass for ... P00455 and P16013 with modifications using PeptideMass (www.expasy.org) set to generate the average mass for ... P00455 and P16013 with modifications using PeptideMass (www.expasy.org) set to generate the average mass for ... P00455 and P16013 with modifications using PeptideMass (www.expasy.org) set to generate the average mass for ... P00455 and P16013 with modifications using PeptideMass (www.expasy.org) set to generate the average mass for ...
Tópico(s): Redox biology and oxidative stress
2001 - Elsevier BV | Journal of Biological Chemistry
Julien Mariethoz, Davide Alocci, Alessandra Gastaldello, Oliver Horlacher, Elisabeth Gasteiger, Miguel A. Rojas‐Macias, Niclas G. Karlsson, Nicolle H. Packer, Frédérique Lisacek,
Glycomics@ExPASy (https://www.expasy.org/glycomics) is the glycomics tab of ExPASy, the server of SIB Swiss Institute of Bioinformatics. It was created in ... facilitate data exploration and support hypothesis building. Glycomics@ExPASy was designed, and is developed, with a long- ...
Tópico(s): Genetics, Bioinformatics, and Biomedical Research
2018 - Elsevier BV | Molecular & Cellular Proteomics
Séverine Duvaud, Chiara Gabella, Frédérique Lisacek, Heinz Stockinger, Vassilios Ioannidis, Christine Durinx,
... storage, analysis and interpretation of biological data. Through Expasy (https://www.expasy.org), the Swiss Bioinformatics Resource Portal, the scientific ... life science and biomedical research areas. In 2020, Expasy was redesigned through a user-centric approach, known ... users' needs and expectations, the new version of Expasy provides an up-to-date and accurate description ...
Tópico(s): Genetics, Bioinformatics, and Biomedical Research
2021 - Oxford University Press | Nucleic Acids Research
Wendy A. Bickmore, Heidi G. Sutherland,
... of pI values? The ProtParam tool (http://www.expasy.ch/tools/protparam.html) was used to determine ... values, estimated using the ProtParam tool (http://www.expasy.ch/tools/protparam.html) (at 0.25 unit ... kDa), estimated using the ProtParam tool (http://www.expasy.ch/tools/protparam.html), for proteins reported to ... were determined with the ProtParam tool (http://www.expasy.ch/tools/protparam.html). At the other end ...
Tópico(s): Plant nutrient uptake and metabolism
2002 - Springer Nature | The EMBO Journal
Eric Sekyere, Michael R Food, Des R. Richardson,
... program Sosui from the Expert Protein Analysis System (ExPASy) [4], the short MTf1 transcript was predicted to ... a soluble protein. In addition, two programs from ExPASy (the big-PI Predictor and DGPI) indicated there ... Google Scholar 4 The Expert Protein Analysis System (ExPASy)-Proteomics Tools, www.expasy.org. Google Scholar 5 N Duchange, A Ochoa, ...
Tópico(s): Biochemical Analysis and Sensing Techniques
2002 - Wiley | FEBS Letters
Maria C. Edman, Stefan Berg, Patrik Storm, Malin Wikström, Susanne Vikström, Anders Öhman, Åke Wieslander,
... were further analyzed with tools available at the ExPASy Molecular Biology Server (www.expasy.ch) (Swiss Institute of Bioinformatics) and with the ... PdbViewer program for alignment (Version 3.7; www.expasy.ch/spdbv/) (25Guex N. Peitsch M.C. Electrophoresis. ... SWISS-MODEL program server (Version 3.5; www.expasy.ch/swissmod/SWISS-MODEL.html) for automatic model ...
Tópico(s): Carbohydrate Chemistry and Synthesis
2003 - Elsevier BV | Journal of Biological Chemistry
Karen A. West, Lin Yan, K.G. Shadrach, Sun Jian, Azeem Hasan, Masaru Miyagi, John S. Crabb, Joe G. Hollyfield, Alan D. Marmorstein, John W. Crabb,
... Links to Swiss Protein accession numbers use the EXPASY server at http://us.expasy.org/sprot/. NCBI accession numbers are in italics. ... Links to Swiss Protein accession numbers use the EXPASY server at http://us.expasy.org/sprot/. NCBI accession numbers are in italics. ...
Tópico(s): Retinal Imaging and Analysis
2003 - Elsevier BV | Molecular & Cellular Proteomics
Kelly R. Atkinson, Marion Blumenstein, Michael A. Black, Steven Wu, Nikola Kasabov, Rennae S. Taylor, Garth J. S. Cooper, Robyn A. North,
... using the Compute MW/pI tool (http://www.expasy.org/tools/pi_tool.html).2DE282.5Apolipoprotein C- ... using the Compute MW/pI tool (http://www.expasy.org/tools/pi_tool.html).P0102429cMolecular mass was ... using the Compute MW/pI tool (http://www.expasy.org/tools/pi_tool.html).8 (7)39. ... using the Compute MW/pI tool (http://www.expasy.org/tools/pi_tool.html).d Complement C3 ...
Tópico(s): MicroRNA in disease regulation
2008 - Elsevier BV | Journal of Lipid Research
Christine Hoogland, Khaled Mostaguir, Ron D. Appel, Frédérique Lisacek,
Since it was launched in 1993, the ExPASy server has been and is still a reference in the proteomics world. ExPASy users access various databases, many dedicated tools, and lists of ... World-2DPAGE Constellation, accessible at http://world-2dpage.expasy.org/. It is composed of the established WORLD- ...
Tópico(s): Machine Learning in Bioinformatics
2008 - Elsevier BV | Journal of Proteomics
Panu Artimo, Murthy V. Jonnalagedda, Konstantin Arnold, Delphine Baratin, Gábor Csárdi, Edouard de Castro, Séverine Duvaud, Volker Flegel, Andrés Fortier, Elisabeth Gasteiger, Aurélien Grosdidier, Celine Hernández, Vassilios Ioannidis, Dmitry Kuznetsov, Robin Liechti, Sébastien Moretti, Khaled Mostaguir, Nicole Redaschi, Grégoire Rossier, Ioannis Xénarios, Heinz Stockinger,
ExPASy (http://www.expasy.org) has worldwide reputation as one of the main bioinformatics resources for proteomics. It has now evolved, becoming an ... provides, in particular, visual guidance for newcomers to ExPASy.
Tópico(s): Genetics, Bioinformatics, and Biomedical Research
2012 - Oxford University Press | Nucleic Acids Research
Peter Tormay, Anthony Coates, Brian E. Henderson,
... available. Subsequently, the alignments were submitted to the ExPASy modeling server (swissmodel.expasy.org/) (13.Schwede T. Kopp J. Guex N. ... model was viewed using the Pdb viewer (www.expasy.org/spdbv/) (14.Guex N. Peitsch M.C. ... M. tuberculosis Cpn60.1 with GroEL using the ExPASy modeling server. A, three-dimensional representation of the ...
Tópico(s): Protein Structure and Dynamics
2005 - Elsevier BV | Journal of Biological Chemistry
Renu Batra, Karin Abarca-Heidemann, Heinz G. Körschen, Christos Tziatzios, Matthias Stoldt, Ivan L. Budyak, Dieter Willbold, Harald Schwalbe, Judith Klein‐Seetharaman, U. Benjamin Kaupp,
... were calculated using the program ProtParam at the EXPASY server (/www.expasy.org/tools). The mean hydrophobicity (H) is the ... were determined using the Protscale program at the EXPASY server, selecting the option "Hphob/Kyte and Doolittle," ... PredictProtein, nnPredict, APSSP, and AGADIR available on the EXPASY server.PONDR Prediction of GARP Proteins—Protein sequences ...
Tópico(s): bioluminescence and chemiluminescence research
2005 - Elsevier BV | Journal of Biological Chemistry
Dale D. Edberg, Joshua Adkins, David L. Springer, Raymond Reeves,
... potential human keratin contamination masses identified by the EXPASY FindPept tool (www.expasy.ch) were removed from each tryptic spectrum. Autodigestion ... and sodium adducts were further analyzed with the EXPASY FindMod tool (www.expasy.ch), Protein Prospector MS-digest program (www.prospector. ...
Tópico(s): Ubiquitin and proteasome pathways
2005 - Elsevier BV | Journal of Biological Chemistry
Josip Blonder, Atsushi Terunuma, Thomas P. Conrads, King C. Chan, Carole Yee, David A. Lucas, Carl F. Schaefer, Li‐Rong Yu, Haleem J. Issaq, Timothy D. Veenstra, Jonathan Vogel,
... value calculated using ProtParam tool at http://us.expasy.org/TMDcNumber of mapped transmembrane domains by the ... value calculated using ProtParam tool at http://us.expasy.org/c Number of mapped transmembrane domains by ... value calculated using ProtParam tool at http://us.expasy.org/Claudin-1O95832Tight junction440.53365Claudin-3O15551Tight junction240.605Junction ... value calculated using ProtParam tool at http://us.expasy.org/ Open table in a new tab The ...
Tópico(s): Lipid Membrane Structure and Behavior
2004 - Elsevier BV | Journal of Investigative Dermatology
Pia Ballweber, Jürgen Markl, Thorsten Burmester,
... using the program PEPTIDE-MASS. 2Available at the ExPASy web server: www.expasy.ch. Sequence analyses were carried out with the ... the Genetics Computer Group (GCG, Wisconsin) and the ExPASy web server.2 Sequences were added by hand ...
Tópico(s): Physiological and biochemical adaptations
2002 - Elsevier BV | Journal of Biological Chemistry
Stephen M. Gómez, John N. Nishio, Kym F. Faull, Julian P. Whitelegge,
... protein sequences (PIR or Swiss-Prot) using PeptideMass (expasy.cbr.nrc.ca/tools/peptide-mass.html). Post- ... Prot and TrEMBL data bases with TagIdent (ca.expasy.org/tools/tagident.html). The ProtParam tool at ExPASy was used to calculate a predicted hydrophobicity (GRAVY; ...
Tópico(s): Algal biology and biofuel production
2002 - Elsevier BV | Molecular & Cellular Proteomics
Jean‐Charles Sanchez, Véronique Converset, Anna L. Nolan, G. M. Schmid, Steven Wang, Manfred Heller, Matthew V. Sennitt, Denis F. Hochstrasser, Michael A. Cawthorne,
... Protein identification was carried out using SmartIdent (www.expasy.ch/sprot/SmartIdent.html). It is a tool ... Scholar). The database can be found on the ExPASy server (www.expasy.ch/cgi-bin/map2/def?ISLETS_MOUSE). Fig. ...
Tópico(s): Adipokines, Inflammation, and Metabolic Diseases
2002 - Elsevier BV | Molecular & Cellular Proteomics
Susanne Vejda, Carsten Posovszky, Sieglinde Zelzer, Barbara Peter, Editha Bayer, Dieter Gelbmann, Rolf Schulte‐Hermann, Christopher Gerner,
... 1997; 186: 7-15Google Scholar) made accessible by ExPASy at www.expasy.ch/. Calculation of molecular weight and pI data ... 1993; 14: 1023-1031Google Scholar) made accessible by ExPASy. We compared the plasma protein composition of 16 ...
Tópico(s): Aldose Reductase and Taurine
2002 - Elsevier BV | Molecular & Cellular Proteomics
Nicole M. Verrills, Bradley J. Walsh, Gary S. Cobon, Peter G. Hains, Maria Kavallaris,
... the Swiss-Prot and TrEMBL protein databases (www.expasy.org) using the MassLynx search program (Micromass, Manchester, ... no.bSwiss-Prot accession number, accessible at www.expasy.org.Protein identificationProtein expressioncThe expression value is the " ... b Swiss-Prot accession number, accessible at www.expasy.org.c The expression value is the "q" ...
Tópico(s): Microtubule and mitosis dynamics
2003 - Elsevier BV | Journal of Biological Chemistry
Christian Tendeng, Evelyne Krin, Olga Soutourina, Antoine Marin, Antoine Danchin, Philippe Bertin,
... software on the Ex-PASy web site (www.expasy.org/tools/protparam.html) was used to determine ... NS proteins using the ProtParam software on the ExPASy web site (www.expasy.org/tools/protparam.html). Modifications in the content ...
Tópico(s): Genomics and Phylogenetic Studies
2003 - Elsevier BV | Journal of Biological Chemistry
Alan D. Winter, Johanna Myllyharju, Antony P. Page,
... and predicted posttranslational modifications were performed on the ExPASy proteomics tools data base (www.expasy.ch). The full-length coding sequence of B. ... detection kits. BLASTX analysis was performed on the ExPASy proteomics tools data base. A 2.2-kb ...
Tópico(s): Advanced Glycation End Products research
2003 - Elsevier BV | Journal of Biological Chemistry
Ghislaine Recorbet, Hélène Rogniaux, V. Gianinazzi-Pearson, Eliane Dumas‐Gaudot,
... Ruepp et al. (2004) using Uniprot annotations at ExPASy (http://www.expasy.org/sprot/). Theoretical molecular weight (Mw) and isoelectric ... calculated using the Compute pI/Mw tool from ExPASy. Subcellular location of proteins was determined using Uniprot ...
Tópico(s): Fungal Biology and Applications
2008 - Wiley | New Phytologist
Cédric Bauvois, Lilian Jacquamet, Adrienne L. Huston, Franck Borel, Georges Feller, Jean‐Luc Ferrer,
... PubMed Scopus (3312) Google Scholar) tools from the ExPASy proteomics server. Structure quality was evaluated with MOLPROBITY ( ... were omitted for calculation.LTA4HFrequency in Swiss-ProtbSee ExPASy Web site.No.FrequencyNo.Frequency%%%Asp467.6345.65. ... signal residues were omitted for calculation.b See ExPASy Web site.c Values in italic type correspond ...
Tópico(s): Antimicrobial Peptides and Activities
2008 - Elsevier BV | Journal of Biological Chemistry
Josy ter Beek, Ria H. Duurkens, Guus B. Erkens, Dirk Jan Slotboom,
... Extinction coefficientbCalculated via the ProtParam tool on the ExPASy Proteomics Server. Extinction coefficients were calculated on the ... calculated MWbCalculated via the ProtParam tool on the ExPASy Proteomics Server. Extinction coefficients were calculated on the ... b Calculated via the ProtParam tool on the ExPASy Proteomics Server. Extinction coefficients were calculated on the ...
Tópico(s): Metal complexes synthesis and properties
2010 - Elsevier BV | Journal of Biological Chemistry