John K. Leys, E. L. SAnderson,
... Light as Narcotic, To Beat the Lusitania, A Python Incubating 70 Eggs, New Bell for Lightship, The Visit of Mr. Winston Churchill, The Empire Extending, Big Game Regulations Cost of Sportsmans's License £50. Rupees 750, The German Emperor Feeling the ...
1907 - Gale Group | NCCO EuropeAfrica
Michiel de Hoon, Seiya Imoto, John P. Nolan, Satoru Miyano,
... C extension module Pycluster were released under the Python License, while the Perl module Algorithm::Cluster was released ...
Tópico(s): Bioinformatics and Genomic Networks
2004 - Oxford University Press | Bioinformatics
Mehari B. Zerihun, Fabrizio Pucci, Emanuel K. Peter, Alexander Schug,
... github.com/KIT-MBS/pydca or from the Python Package Index under the MIT License.Supplementary data are available at Bioinformatics online.
Tópico(s): Bioinformatics and Genomic Networks
2019 - Oxford University Press | Bioinformatics
Adriano Martinelli, Maria Anna Rapsomaniki,
... Availability and implementation ATHENA is available as a Python package under an open-source license at: https://github.com/AI4SCR/ATHENA. Detailed documentation ...
Tópico(s): Health, Environment, Cognitive Aging
2022 - Oxford University Press | Bioinformatics
Douglas M. Fowler, Carlos L. Araya, Wayne Gerard, Stanley Fields,
... relationships. Availability and Implementation: Enrich is implemented in Python and is available under a FreeBSD license at http://depts.washington.edu/sfields/software/enrich/. ...
Tópico(s): Genomics and Phylogenetic Studies
2011 - Oxford University Press | Bioinformatics
Mehdi Ali, Charles Tapley Hoyt, Daniel Domingo‐Fernándéz, Jens Lehmann, Hajira Jabeen,
... and implementation BioKEEN and PyKEEN are open source Python packages publicly available under the MIT License at https://github.com/SmartDataAnalytics/BioKEEN and https:// ...
Tópico(s): Computational Drug Discovery Methods
2019 - Oxford University Press | Bioinformatics
Yang Xu, Simon J. Baumgart, Christian M. Stegmann, Sikander Hayat,
... annotation across multiple datasets.MACA is written in python and released under GNU General Public License v3.0. The source code is available at ...
Tópico(s): Advanced biosensing and bioanalysis techniques
2021 - Oxford University Press | Bioinformatics
Jeremy Muhlich, Yu‐An Chen, Clarence Yapp, Douglas Russell, Sandro Santagata, Peter K. Sorger,
... pipelines. Availability and implementation ASHLAR is written in Python and is available under the MIT license at https://github.com/labsyspharm/ashlar. The newly ...
Tópico(s): Advanced Fluorescence Microscopy Techniques
2022 - Oxford University Press | Bioinformatics
Salvatore Cosentino, Wataru Iwasaki,
... datasets.SonicParanoid is available with a GNU GPLv3 license on the Python Package Index and BitBucket. Documentation is available at ...
Tópico(s): Machine Learning in Bioinformatics
2018 - Oxford University Press | Bioinformatics
Gregory L. Medlock, Thomas J. Moutinho, Jason A. Papin,
... reconstructions. Medusa is available under the permissive MIT license from the Python Packaging Index (https://pypi.org) and from github ( ...
Tópico(s): Biofuel production and bioconversion
2020 - Public Library of Science | PLoS Computational Biology
Nathan Mih, Elizabeth Brunk, Ke Chen, Edward Catoiu, Anand V. Sastry, Erol Kavvas, Jonathan M. Monk, Zhen Zhang, Bernhard Ø. Palsson,
... workflows. Availability and implementation ssbio is implemented in Python and available to download under the MIT license at http://github.com/SBRG/ssbio. Documentation and ...
Tópico(s): Protein Structure and Dynamics
2018 - Oxford University Press | Bioinformatics
Franziska Lang, Pablo Riesgo-Ferreiro, Martin Löwer, Uǧur Şahin, Barbara Schrörs,
... NeoFox is freely available as an open source Python package released under the GNU General Public License (GPL) v3 license at https://github.com/TRON- ...
Tópico(s): Immunotherapy and Immune Responses
2021 - Oxford University Press | Bioinformatics
Brent S. Pedersen, Aaron R. Quinlan,
... https://github.com/brentp/cyvcf2 under the MIT license and from common python package managers. Detailed documentation is available at http:// ...
Tópico(s): Gene expression and cancer classification
2017 - Oxford University Press | Bioinformatics
Íñigo Marcos‐Alcalde, Eduardo López‐Viñas, Paulino Gómez‐Puertas,
... offers distinct plotting solutions as well as direct python scripting.MEPSAnd is freely available (under GPLv3 license) at: http://bioweb.cbm.uam.es/software/MEPSAnd/. ...
Tópico(s): Machine Learning in Bioinformatics
2019 - Oxford University Press | Bioinformatics
N. Tessa Pierce‐Ward, Luiz Irber, Taylor Reiter, Phillip Brooks, C. Titus Brown,
... metagenomes. sourmash is implemented in C++, Rust, and Python, and is freely available under the BSD license at http://github.com/dib-lab/sourmash.
Tópico(s): Genetic diversity and population structure
2019 - Faculty of 1000 | F1000Research
Blake L. Joyce, Asher Haug-Baltzell, Sean Davey, Matthew Bomhoff, James C. Schnable, Eric Lyons,
... SynMap.pl . The software is open source (MIT license) and executable with Python 2.7 or iPython notebook, and available on ...
Tópico(s): Plant Disease Resistance and Genetics
2016 - Oxford University Press | Bioinformatics
Philip Ewels, Måns Magnusson, Sverker Lundin, Max Käller,
... customization.MultiQC is available with an GNU GPLv3 license on GitHub, the Python Package Index and Bioconda. Documentation and example reports ...
Tópico(s): Single-cell and spatial transcriptomics
2016 - Oxford University Press | Bioinformatics
Jimmy Caroli, Mattia Forcato, Silvio Bicciato,
... http://aptani.unimore.it. APTANI2 is implemented in Python 3.4, released under the GNU GPL3.0 License, and compatible with Linux, Mac OS and the ...
Tópico(s): Machine Learning in Bioinformatics
2019 - Oxford University Press | Bioinformatics
Trevor Manz, Sehi L’Yi, Nils Gehlenborg,
... analysis workflows.Gos is released under the MIT License and available on the Python Package Index (PyPI). The source code is publicly available on GitHub (https://github.com/gosling- ...
Tópico(s): RNA and protein synthesis mechanisms
2023 - Oxford University Press | Bioinformatics
Jean Kossaifi, Yannis Panagakis, Anima Anandkumar, Maja Pantić,
... standards adopted by the main projects of the Python scientific community, and to seamlessly integrate with them. Its BSD license makes it suitable for both academic and commercial ...
Tópico(s): Computational Physics and
2019 - The MIT Press | Journal of Machine Learning Research
Thomas Moerman, Sara Aibar, Carmen Bravo González‐Blas, Jaak Simm, Yves Moreau, Jan Aerts, Stein Aerts,
... of GENIE3, as a user-friendly open source Python package.Arboreto is available under the 3-Clause BSD license at http://arboreto.readthedocs.io.Supplementary data are ...
Tópico(s): Gene expression and cancer classification
2018 - Oxford University Press | Bioinformatics
Harsh Bhatia, Helgi I. Ingólfsson, Timothy S. Carpenter, Felice C. Lightstone, Peer‐Timo Bremer,
... properties. The software provides a simple-to-use Python API and is released open-source under a GPL3 license.
Tópico(s): Glycosylation and Glycoproteins Research
2019 - American Chemical Society | Journal of Chemical Theory and Computation
A. K. M. Firoj Mahmud, Nicolas Delhomme, Soumyadeep Nandi, Maria Fällman,
... visualizing data and results.ProkSeq is implemented in Python and is published under the MIT source license. The pipeline is available as a Docker container ...
Tópico(s): Molecular Biology Techniques and Applications
2020 - Oxford University Press | Bioinformatics
Sascha Steinbiss, Gordon Gremme, Christin Schärfer, Malte Mäder, Stefan Kurtz,
... we provide bindings to the scripting languages Ruby, Python and Lua.The software is available under an open-source license as part of GenomeTools (http://genometools.org/annotationsketch. ...
Tópico(s): Genomics and Chromatin Dynamics
2008 - Oxford University Press | Bioinformatics
Charles Tapley Hoyt, Andrej Konotopez, Christian Ebeling,
... BEL.PyBEL is implemented in platform-independent, universal Python code. Its source is distributed under the Apache 2.0 License at https://github.com/pybel.charles.hoyt@scai. ...
Tópico(s): Gene Regulatory Network Analysis
2017 - Oxford University Press | Bioinformatics
Dibyajyoti Maity, Debnath Pal,
... saving time.MD DaVis is an open-source Python 3 package (https://pypi.org/project/md-davis/) distributed under MIT license. The source code is available at https://github. ...
Tópico(s): Algorithms and Data Compression
2022 - Oxford University Press | Bioinformatics
Sherif Abdulkader Tawfik, Salvy P. Russo,
... com/sheriftawfikabbas/pyphotonics Licensing provisions: GNU General Public License 3 Programming language: Python 3.9 Nature of problem: While density functional ...
Tópico(s): Advanced Semiconductor Detectors and Materials
2021 - Elsevier BV | Computer Physics Communications
Boris Muzellec, Maria Teleńczuk, Vincent Cabeli, Mathieu Andreux,
... and can be more easily interfaced with modern python-based data science tools.PyDESeq2 is released as an open-source software under the MIT license. The source code is available on GitHub at ...
Tópico(s): Single-cell and spatial transcriptomics
2023 - Oxford University Press | Bioinformatics
Alexander Auer, Maximilian T. Strauss, Sebastian Strauss, Ralf Jungmann,
... interface. Availability and implementation nanoTRON is written in Python and freely available under the MIT license as a part of the software collection Picasso ...
Tópico(s): Molecular Biology Techniques and Applications
2020 - Oxford University Press | Bioinformatics
Cameron L. M. Gilchrist, Yit‐Heng Chooi,
... com/gamcil/clustermap.js, respectively) under the MIT license. clinker can be installed directly from the Python Package Index via pip.Supplementary data are available ...
Tópico(s): Gene expression and cancer classification
2021 - Oxford University Press | Bioinformatics