Hideyuki Mukai, Takayoshi Kuno, Tanaka Hozumi, Dai Hirata, Miyakawa Tokichi, Tanaka Chikako,
... binding fraction. They are designated as SSE1 and SSE2, because their predicted amino acid (aa) sequences are ... to place them in known subfamilies. SSE1 and SSE2 are thought to encode polypeptides of 693 aa ... a few-fold upon upshift to 37°C. SSE2 mRNAs were present at low level during steady- ... temperature. No phenotypic effects of the mutation in SSE2 were detected, and the growth property of the ...
Tópico(s): Insect and Pesticide Research
1993 - Elsevier BV | Gene
... for random number generators (RNGs) based upon the SSE2 command set is presented. The library contains realization ... of modern and most reliable generators. Usage of SSE2 command set allows to substantially improve performance of ... of the generators, Intel or AMD CPU supporting SSE2 command set is required. In order to use ...
Tópico(s): Computational Physics and Python Applications
2011 - Elsevier BV | Computer Physics Communications
Lance Shaner, Amy Trott, Jennifer L. Goeckeler-Fried, Jeffrey L. Brodsky, Kevin A. Morano,
... 71) Google Scholar).SSE1 and its close paralog SSE2 are the S. cerevisiae members of the Hsp110 ... slow growing and slightly temperature sensitive. Deletion of SSE2 results in no observable growth defects, and deletion ... 1A. It was previously reported that deletion of SSE2 in a sse1Δ strain did not show any ... However, our laboratory recently found that SSE1 and SSE2 constitute an essential gene pair.3 Surprisingly, we ...
Tópico(s): Protein Structure and Dynamics
2004 - Elsevier BV | Journal of Biological Chemistry
Xiaodong Liu, Kevin A. Morano, Dennis J. Thiele,
... the Hsp110/Sse1 subfamily are the SSE1 and SSE2 genes from yeast, which show 76% identity with ... PubMed Scopus (104) Google Scholar). The SSE1 and SSE2 genes were first identified as calmodulin-binding proteins ( ... Scholar). However, the true functions of Sse1 and Sse2 in yeast are currently unknown. While heat shock- ... to share substantial homology (∼40%) to the SSE1/SSE2 genes (40Lee-Yoon D. Easton D. Murawski M. ...
Tópico(s): Insect and Pesticide Research
1999 - Elsevier BV | Journal of Biological Chemistry
Produção Nacional
Revisado por pares
Valéria Leme Gonçalves Panissa, Ursula Ferreira Júlio, David H. St‐Pierre, Alícia Tavares da Silva Gomes, Renan Santos Caldeira, Fábio Santos Lira, Mônica Yuri Takito, Émerson Franchini,
... performed 1h (SSE1h and HIIE1h) or 2.5h (SSE2.5h and HIIE2.5h) after the consumption of ... HIIE2.5h (2508.5 ± 1709.3 kJ) and SSE2.5h (3426.6 ± 1788.0 kJ). Higher hunger ... with respect to those obtained after HIIE2.5h, SSE2.5h and CTRL. Lactate concentrations were higher in ... HIIE2.5h compared to those of SSE1h and SSE2.5h. These results show that HIIE performed 2. ...
Tópico(s): Health and Lifestyle Studies
2019 - Elsevier BV | Appetite
Maria Guskova, Lev Barash, Lev Shchur,
... of the generators, Intel or AMD CPU supporting SSE2 command set is required. In order to use ... allows the use of predefined macros such as __SSE2__ and __AVX2__ in the source code. This is ... Shchur, RNGSSELIB: Program library for random number generation, SSE2 realization, Computer Physics Communications, 182 (7), 1518–1527 ( ...
Tópico(s): Cellular Automata and Applications
2015 - Elsevier BV | Computer Physics Communications
Hayun Jo, Seunghan Lee, Hyeonho Yun, Jeongwhui Hong, Mohammad Moniruzzaman, Sungchul C. Bai, Gunhyun Park, Seokwoo Chee, Tae‐Eun Jeon,
... diets: control (FM100% + FMA0%), FMA 0 (FM100% + FMA0% + SSE2%), FMA 12 (FM88% + FMA12% + SSE2%), and FMA 24 (FM76% + FMA24% + SSE2%). After the feeding trial, weight gain and specific ...
Tópico(s): Aquatic life and conservation
2016 - Wiley | Journal of the World Aquaculture Society
Anna Inn-Tung Chen, Ming-Syan Chen⋆, Tien-Ren Chen, Chen-Mou Cheng, Jíntai Ding, Eric Li-Hsiang Kuo, Frost Yu-Shuang Lee, Bo‐Yin Yang,
... many small integer arithmetic/logic resources, embodied by SSE2 or other vector instruction sets, that are useful ... of relatively small odd prime characteristics can exploit SSE2 instructions, supported by most modern 64-bit Intel ...
Tópico(s): Polynomial and algebraic computation
2009 - Springer Science+Business Media | Lecture notes in computer science
Harald Wegele, Martin Haslbeck, Jochen Reinstein, Johannes Büchner,
... PubMed Scopus (93) Google Scholar). Finally, Sse1 and Sse2 are up-regulated severalfold under heat shock conditions. ... conditions, Sse1 is present at moderate levels, and Sse2 is present at very low levels (37Mukai H. ...
Tópico(s): thermodynamics and calorimetric analyses
2003 - Elsevier BV | Journal of Biological Chemistry
Adam M. Szalkowski, Christian Ledergerber, Philipp Krähenbühl, Christophe Dessimoz,
... billion cell-updates per second (GCUPS). Using the SSE2 instruction set, a quad-core Intel Pentium can ...
Tópico(s): Algorithms and Data Compression
2008 - BioMed Central | BMC Research Notes
Miguel Pedrosa Ferreira, Nuno Roma, Luís M. S.Russo,
... using Farrar’s striped processing pattern with Intel SSE2 instruction set extension. A new SIMD vectorization of ... Viterbi decoding algorithm is proposed, based on an SSE2 inter-task parallelization approach similar to the DNA ...
Tópico(s): Machine Learning in Bioinformatics
2014 - BioMed Central | BMC Bioinformatics
Jennifer L. Abrams, Jacob Verghese, Patrick A. Gibney, Kevin A. Morano,
... exchange factors (NEFs) homologous to human counterparts: Sse1/Sse2 (Heat shock protein 110 (Hsp110)), Fes1 (HspBP1), and ... be attributed to deletion of the minor Hsp110 SSE2 or the Bag homolog SNL1. Together, these lines ...
Tópico(s): Protein Structure and Dynamics
2014 - Elsevier BV | Journal of Biological Chemistry
... development of parallel lattice applications and includes some SSE2 optimizations for clusters of Pentium 4 PCs.
Tópico(s): Algorithms and Data Compression
2002 - Elsevier BV | Nuclear Physics B - Proceedings Supplements
Tânia Simões, Miguel C. Teixeira, Alexandra R. Fernandes, Isabel Sá‐Correia,
... chaperones of the HSP70 family ( SSA1 , SSA4 , and SSE2 ) showed a slight effect. A more significant role ...
Tópico(s): Microbial Metabolic Engineering and Bioproduction
2003 - American Society for Microbiology | Applied and Environmental Microbiology
Khaled Z. Ibrahim, François Bodin, O. Pène,
... to achieve an 8.3x speedup over an SSE2 optimized version on 2.8 GHz Intel Xeon ...
Tópico(s): Particle physics theoretical and experimental studies
2008 - Elsevier BV | Journal of Parallel and Distributed Computing
Terence P. Walsh, Caleb Webber, Stephen M. J. Searle, Shane Sturrock, Geoffrey J. Barton,
... computationally expensive, SCANPS exploits onchip parallelism (MMX and SSE2 instructions on Intel chips) as well as MPI ...
Tópico(s): Machine Learning in Bioinformatics
2008 - Oxford University Press | Nucleic Acids Research
Maxim Naumov, Seungwon Lee, Benjamin P Haley, Hagyoul Bae, Stephen Clark, Rajib Rahman, Ha Im Ryu, Faisal Saied, Gerhard Klimeck,
... The effectiveness of code optimization techniques such as SSE2 vectorization is also presented.
Tópico(s): Surface and Thin Film Phenomena
2008 - Springer Science+Business Media | Journal of Computational Electronics
M. Hassaballah, Saleh Omran, Yousef B. Mahdy,
... introduction of streaming SIMD extensions (SSE), SSE 2 (SSE2) and SSE 3 (SSE3). Although programming using these ...
Tópico(s): Algorithms and Data Compression
2008 - Oxford University Press | The Computer Journal
A. Mandal, Patrick A. Gibney, Nadinath B. Nillegoda, Maria A. Theodoraki, Avrom J. Caplan, Kevin A. Morano,
... compensated for loss of Sse1, whereas the paralog Sse2 fully restored GR maturation and Ste11ΔN degradation. Sse1 ...
Tópico(s): Fungal and yeast genetics research
2010 - American Society for Cell Biology | Molecular Biology of the Cell
Xiandong Meng, Vipin Chaudhary,
... with Streaming Single Instruction Multiple Data Extensions 2 (SSE2) instructions, reconfigurable coprocessors, and legacy processors together into ...
Tópico(s): Algorithms and Data Compression
2010 - Institute of Electrical and Electronics Engineers | IEEE Transactions on Parallel and Distributed Systems
Adrianto Wirawan, Chee Keong Kwoh, Bertil Schmidt,
Multiple sequence alignment is an important tool in bioinformatics. Although efficient heuristic algorithms exist for this problem, the exponential growth of biological data demands an even higher throughput. The recent emergence of multi-core technologies has made it possible to achieve a highly improved execution time for many bioinformatics applications. In this article, we introduce an implementation that accelerates the distance matrix computation on x86 and Cell Broadband Engine, a homogeneous ...
Tópico(s): Error Correcting Code Techniques
2010 - Oxford University Press | Bioinformatics
Thomas Schiwietz, Supratik Bose, Jonathan S. Maltz, Rüdiger Westermann,
... gain over a highly optimized CPU implementation using SSE2/3 commands. At the same time, the image ...
Tópico(s): Advanced Vision and Imaging
2007 - SPIE | Proceedings of SPIE, the International Society for Optical Engineering/Proceedings of SPIE
... are received. We then employ hardware acceleration with SSE2 and AltiVec SIMD vector instructions on x86 and ...
Tópico(s): Coding theory and cryptography
2007 - Institute of Electrical and Electronics Engineers | International Workshop on Quality of Service
Myungchul Kim, Dong‐Jin Lee, Igor L. Markov,
... to parallelism, and we report empirical studies with SSE2 instructions and up to eight parallel threads.
Tópico(s): Low-power high-performance VLSI design
2011 - Institute of Electrical and Electronics Engineers | IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems
W. Timothy J. White, Barbara R. Holland,
... distributed-memory multiprocessor with high efficiency. An optimized SSE2 inner loop provides additional speedup for Pentium 4 ...
Tópico(s): Algorithms and Data Compression
2011 - Oxford University Press | Bioinformatics
Lance Shaner, Rui Sousa, Kevin A. Morano,
SSE1 and SSE2 encode the essential yeast members of the Hsp70-related Hsp110 molecular chaperone family. Both mammalian Hsp110 and the ...
Tópico(s): Protein Structure and Dynamics
2006 - American Chemical Society | Biochemistry
Holger Raviol, Heather Sadlish, Fernanda Rodriguez, Matthias P. Mayer, Bernd Bukau,
... Ssa1p-mediated functions. Combined deletion of SSE1 and SSE2 genes is lethal We sought to further characterize ...
Tópico(s): Insect and Pesticide Research
2006 - Springer Nature | The EMBO Journal
Gang Ren, Peng Wu, David Padua,
... improvement is 48% on VMX and 68% on SSE2. For several applications, near perfect speedups have been ...
Tópico(s): Algorithms and Data Compression
2006 - Association for Computing Machinery | ACM SIGPLAN Notices
Zdravko Dragovic, Sarah A. Broadley, Yasuhito Shomura, Andreas Bracher, F. Ulrich Hartl,
... individually essential, but deletion of both SSE1 and SSE2 results in synthetic lethality, while deletion of SSE1 ...
Tópico(s): Plant biochemistry and biosynthesis
2006 - Springer Nature | The EMBO Journal
Aart J. C. Bik, Milind Girkar, Paul M. Grey, Xinmin Tian,
The MMXTM technology and SSE/SSE2 (streaming-SIMD-extensions) introduced a variety of SIMD instructions that can exploit data parallelism in numerical and multimedia applications. In particular, ...
Tópico(s): Numerical Methods and Algorithms
2005 - Springer Science+Business Media | Lecture notes in computer science