Artigo Acesso aberto Revisado por pares

Enhanced DNA Extraction and PCR Amplification of Mitochondrial Genes from Formalin-Fixed Museum Specimens

1997; Future Science Ltd; Volume: 22; Issue: 3 Linguagem: Inglês

10.2144/97223bm03

ISSN

1940-9818

Autores

Andrew M. Shedlock, Margo G. Haygood, Theodore W. Pietsch, Paul Bentzen,

Tópico(s)

Metabolomics and Mass Spectrometry Studies

Resumo

BioTechniquesVol. 22, No. 3 BenchmarksOpen AccessEnhanced DNA Extraction and PCR Amplification of Mitochondrial Genes from Formalin-Fixed Museum SpecimensAndrew M. Shedlock, Margo G. Haygood, Theodore W. Pietsch & Paul BentzenAndrew M. Shedlock*Address correspondence to Andrew M. Shedlock, University of California at Berkeley, Department E.S.P.M., 201 Wellman Hall, Berkeley, CA 94720, USA. Internet: E-mail Address: shedlock@nature.berkeley.eduUniversity of Washington, Seattle, WA, Margo G. HaygoodUniversity of Washington, Seattle, WA, Theodore W. PietschUniversity of Washington, Seattle, WA & Paul BentzenUniversity of Washington, Seattle, WAPublished Online:7 Aug 2018https://doi.org/10.2144/97223bm03AboutSectionsPDF/EPUB ToolsAdd to favoritesDownload CitationsTrack Citations ShareShare onFacebookTwitterLinkedInRedditEmail FiguresReferencesRelatedDetailsCited ByUnlocking inaccessible historical genomes preserved in formalin1 October 2021 | Molecular Ecology Resources, Vol. 22, No. 6Invasive snails, parasite spillback, and potential parasite spillover drive parasitic diseases of Hippopotamus amphibius in artificial lakes of Zimbabwe20 August 2021 | BMC Biology, Vol. 19, No. 1New Data from Old SpecimensIchthyology & Herpetology, Vol. 109, No. 2Assessing DNA for fish identifications from reference collections: the good, bad and ugly shed light on formalin fixation and sequencing approaches17 February 2021 | Journal of Fish Biology, Vol. 98, No. 5Molecular Analysis of Dirofilaria repens Isolates from Eye-Care Patients in Greece11 August 2020 | Acta Parasitologica, Vol. 66, No. 1Systematics of DamselfishesIchthyology & Herpetology, Vol. 109, No. 1A DNA metabarcoding approach for recovering plankton communities from archived samples fixed in formalin17 February 2021 | PLOS ONE, Vol. 16, No. 2Taxonomic reassessment of Parasesarma (Crustacea: Brachyura: Decapoda: Sesarmidae) based on genetic and morphological comparisons, with the description of a new genus25 April 2020 | Zoological Journal of the Linnean Society, Vol. 5Evaluation of DNA degradation and establishment of a degradation analysis model for Lepidoptera specimensYao Xu, XueYu Ren, HongBin Wang, Mei Wang & GuoHong Li28 January 2020 | BioTechniques, Vol. 68, No. 3A Method for Fixation of Fish Larvae for Morphological and Genetic Studies1 November 2019 | Journal of Ichthyology, Vol. 59, No. 5A new species of Parasesarma (Decapoda: Brachyura: Sesarmidae) from northern Australian mangroves and its distinction from morphologically similar speciesZoologischer Anzeiger, Vol. 279Systematics and phylogeography of the Australasian mangrove crabs Parasesarma semperi and P. longicristatum (Decapoda : Brachyura : Sesarmidae) based on morphological and molecular dataInvertebrate Systematics, Vol. 32, No. 1Reply to Borsa (2017): Comment on 'Annotated checklist of the living sharks, batoids and chimaeras (Chondrichthyes) of the world, with a focus on biogeographical diversity by Weigmann (2016)'27 December 2016 | Journal of Fish Biology, Vol. 90, No. 4FishTrace: a genetic catalogue of European fishes31 October 2017 | Database, Vol. 2017Ancient DNA analyses of museum specimens from selected Presbytis (primate: Colobinae) based on partial Cyt b sequencesPhylogeny of Trachylepis sp. (Reptilia) from Turkey inferred from mtDNA sequences5 September 2013 | Mitochondrial DNA, Vol. 25, No. 6SPATIO-TEMPORAL CHANGES IN THE STRUCTURE OF AN AUSTRALIAN FROG HYBRID ZONE: A 40-YEAR PERSPECTIVE7 June 2013 | Evolution, Vol. 67, No. 12Improvement of DNA Extraction for Human Papillomavirus Genotyping from Formalin-Fixed Paraffin-Embedded TissuesBioResearch Open Access, Vol. 1, No. 6Comparative Analytical Utility of DNA Derived from Alternative Human Specimens for Molecular Autopsy and DiagnosticsThe Journal of Molecular Diagnostics, Vol. 14, No. 5Nucleic acid quantity and quality from paraffin blocks: Defining optimal fixation, processing and DNA/RNA extraction techniquesExperimental and Molecular Pathology, Vol. 92, No. 1On the status of the Hawaiian seahorses Hippocampus hilonis , H. histrix and H. fisheri (Syngnathidae)Marine Biology Research, Vol. 7, No. 7An ancient icon reveals new mysteries: mummy DNA resurrects a cryptic species within the Nile crocodile9 September 2011 | Molecular Ecology, Vol. 20, No. 20DNA mini-barcoding: An approach for forensic identification of some endangered Indian snake speciesForensic Science International: Genetics, Vol. 5, No. 3Mitochondrial DNA sequence variation and phylogeography of the scarlet kingsnake ( Lampropeltis elapsoides )23 June 2011 | Mitochondrial DNA, Vol. 22, No. 1-2Comparison of methods in the recovery of nucleic acids from archival formalin-fixed paraffin-embedded autopsy tissuesAnalytical Biochemistry, Vol. 400, No. 1Molecular Diagnostic Applications in Forensic ScienceImmunohistochemical Marker for Na+ CP Type Vα (C-20) and Heterozygous Nonsense SCN5A Mutation W822X in a Sudden Cardiac Death Induced by Mild Anaphylactic ReactionApplied Immunohistochemistry & Molecular Morphology, Vol. 17, No. 4Shallow genetic and morphological divergence among seaperches in the South Pacific (family Scorpaenidae; genus Helicolenus )Journal of Fish Biology, Vol. 74, No. 5DNA Isolation and Amplification from Formaldehyde-Fixed Animal Tissues Rich in Mucopolysaccharides, Pigments, and ChitinPreparative Biochemistry and Biotechnology, Vol. 39, No. 1The use of species-specific TaqMan probes for identifying early stage gadoid eggs following formaldehyde fixation1 December 2008 | ICES Journal of Marine Science, Vol. 65, No. 9Heterozygous nonsense SCN5A mutation W822X explains a simultaneous sudden infant death syndrome13 June 2008 | Virchows Archiv, Vol. 453, No. 2Mitochondrial DNA extraction and sequencing of formalin-fixed archival snake tissue11 July 2009 | DNA Sequence, Vol. 19, No. 5DNA extraction formalin-fixed tissue of Psephurus gladius and the applicability of microsatellite primers developed from its related speciesJournal of Lake Sciences, Vol. 20, No. 2A genetic survey of heavily exploited, endangered turtles: caveats on the conservation value of trade animalsAnimal Conservation, Vol. 10, No. 4DNA from formalin-fixed tissue: extraction or repair? That is the questionMarine Biology Research, Vol. 3, No. 5The Isolation of Nucleic Acids from Fixed, Paraffin-Embedded Tissues–Which Methods Are Useful When?20 June 2007 | PLoS ONE, Vol. 2, No. 6Promoter Hypermethylation for Molecular Nodal Staging in Non–Small Cell Lung CancerArchives of Pathology & Laboratory Medicine, Vol. 131, No. 6Evolutionary history of lamprey paired species Lampetra fluviatilis (L.) and Lampetra planeri (Bloch) as inferred from mitochondrial DNA variation2 March 2007 | Molecular Ecology, Vol. 16, No. 9Population fragmentation leads to spatial and temporal genetic structure in the endangered Spanish imperial eagle24 January 2007 | Molecular Ecology, Vol. 16, No. 3Exploitation of archived marine nematodes ? a hot lysis DNA extraction protocol for molecular studiesZoologica Scripta, Vol. 36, No. 1A simple protocol for the extraction and sequence analysis of DNA from study skin of museum collectionsGenetics and Molecular Biology, Vol. 30, No. 4A molecular systematic evaluation of the squid genus Illex (Cephalopoda: Ommastrephidae) in the North Atlantic Ocean and Mediterranean SeaMolecular Phylogenetics and Evolution, Vol. 41, No. 2Extraction of nuclear DNA from bone of skeletonized and fluid‐preserved museum specimensSystematics and Biodiversity, Vol. 4, No. 2Museum fish specimens and molecular taxonomy: A comparative study on DNA extraction protocols and preservation techniquesJournal of Applied Ichthyology, Vol. 22, No. 2Mitochondrial DNA phylogeography of the Mesoamerican spiny-tailed lizards (Ctenosaura quinquecarinata complex): historical biogeography, species status and conservationMolecular Ecology, Vol. 14, No. 10Inhibition of DNA amplification in marine fish larvae preserved in formalin1 August 2005 | Journal of Plankton Research, Vol. 27, No. 8Methylation Profiling of Archived Non–Small Cell Lung Cancer: A Promising Prognostic System15 June 2005 | Clinical Cancer Research, Vol. 11, No. 12Forensic Genetic Analysis of Insect Gut ContentsAmerican Journal of Forensic Medicine & Pathology, Vol. 26, No. 2Genetic analysis of cardiac-specific transcription factors reveals novel insights into molecular causes of congenital heart diseaseFuture Cardiology, Vol. 1, No. 3A new lineage of trypanosomes from Australian vertebrates and terrestrial bloodsucking leeches (Haemadipsidae)International Journal for Parasitology, Vol. 35, No. 4TaqMan DNA technology confirms likely overestimation of cod (Gadus morhua L.) egg abundance in the Irish Sea: implications for the assessment of the cod stock and mapping of spawning areas using egg-based methods7 February 2005 | Molecular Ecology, Vol. 14, No. 3Molecular Phylogenetics of Gadidae and Related Gadiformes Based on Mitochondrial DNA Sequences15 March 2005 | Marine Biotechnology, Vol. 7, No. 1Genetic analysis of cardiac-specific transcription factors reveals insights into congenital heart diseaseMonatsschrift Kinderheilkunde, Vol. 152, No. 11Genetic diversity of Mexican brook lamprey Lampetra (Tetrapleurodon) geminis (Alvarez del Villar, 1966)Genetica, Vol. 122, No. 3Strategies for molecular genetic studies of preserved deep-sea macrofaunaDeep Sea Research Part I: Oceanographic Research Papers, Vol. 51, No. 10Repeated evolution of limblessness and digging heads in worm lizards revealed by DNA from old bones22 August 2004 | Proceedings of the Royal Society of London. Series B: Biological Sciences, Vol. 271, No. 1549Novel NKX2–5 Mutations in Diseased Heart Tissues of Patients with Cardiac MalformationsThe American Journal of Pathology, Vol. 164, No. 6Latest Advances and Trends in PCR-Based Diagnostic MethodsFaecal genetic analysis to determine the presence and distribution of elusive carnivores: design and feasibility for the Iberian lynxMolecular Ecology, Vol. 11, No. 10Formalin Removal from Archival Tissue by Critical Point DryingSheng-Guo Fang, Qiu-Hong Wan & Noboru Fujihara24 September 2018 | BioTechniques, Vol. 33, No. 3New Data from Old Trypanosomatid PreparationsParasitology Today, Vol. 16, No. 6Molecular Phylogeny of Nemadactylus and Acantholatris (Perciformes: Cirrhitoidea: Cheilodactylidae), with Implications for Taxonomy and BiogeographyMolecular Phylogenetics and Evolution, Vol. 13, No. 1Improved method of isolation of DNA from celloidin-embedded tissueThe Laryngoscope, Vol. 109, No. 5Zoogeographical implications of variation in mitochondrial DNA of Arctic grayling ( Thymallus arcticus )4 January 2002 | Molecular Ecology, Vol. 8, No. 1Vintage Helminths Yield Valuable MoleculesParasitology Today, Vol. 14, No. 7DNA damage caused by common cytological fixativesMutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, Vol. 401, No. 1-2Somatic cell cloned transgenic bovine neurons for transplantation in parkinsonian ratsNature Medicine, Vol. 4, No. 5Extraction and Amplification of Mitochondrial DNA from Formalin-Fixed Deep-Sea MollusksMichael R. Chase, Ron J. Etter, Michael A. Rex & Joseph M. Quattro15 August 2018 | BioTechniques, Vol. 24, No. 2 Vol. 22, No. 3 Follow us on social media for the latest updates Metrics Downloaded 820 times History Published online 7 August 2018 Published in print March 1997 Information© 2018 Author(s)PDF download

Referência(s)