Artigo Revisado por pares

Evaluating hypotheses on the origin and diversification of the ringneck snake Diadophis punctatus (Colubridae: Dipsadinae)

2009; Oxford University Press; Volume: 158; Issue: 3 Linguagem: Inglês

10.1111/j.1096-3642.2009.00554.x

ISSN

1096-3642

Autores

Frank M. Fontanella, Mark E. Siddall,

Tópico(s)

Genetic diversity and population structure

Resumo

Zoological Journal of the Linnean SocietyVolume 158, Issue 3 p. 629-640 Evaluating hypotheses on the origin and diversification of the ringneck snake Diadophis punctatus (Colubridae: Dipsadinae) FRANK FONTANELLA, Corresponding Author FRANK FONTANELLA The Graduate Center, City University of New York, 365 Fifth Avenue, New York, NY 10016, USA E-mail: [email protected]Search for more papers by this authorMARK E. SIDDALL, MARK E. SIDDALL Sackler Institute of Comparative Genomics, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USASearch for more papers by this author FRANK FONTANELLA, Corresponding Author FRANK FONTANELLA The Graduate Center, City University of New York, 365 Fifth Avenue, New York, NY 10016, USA E-mail: [email protected]Search for more papers by this authorMARK E. SIDDALL, MARK E. SIDDALL Sackler Institute of Comparative Genomics, American Museum of Natural History, Central Park West at 79th Street, New York, NY 10024, USASearch for more papers by this author First published: 26 February 2010 https://doi.org/10.1111/j.1096-3642.2009.00554.xRead the full textAboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Abstract Close affinities recognized between taxa in Mexico and the contiguous USA have led to a variety of biogeographical scenarios. One such hypothesis suggests that species that occur in both countries have an origin in central Mexico followed by dispersal into the USA. This study expands upon previous phylogeographical work of the ringneck snake Diadophis punctatus by incorporating new data from previously unsampled areas appropriate to critically assess hypotheses regarding a Mexican origin for this species. Maximum likelihood and maximum parsimony analyses inferred a derived position for the lineage from southern Mexico with constraint tests for alternate evolutionary hypotheses resulting in significantly worse likelihood values. Ancestral area reconstructions inferred an origin for D. punctatus in the south-eastern USA followed by a south-east to north-east then westward directionality of historical migration. The position within the phylogeny and date estimate for the south-western + Mexico clade suggests a recent invasion into central Mexico with expansion into the Nearctic/Neotropic transition zone. The extensive lineage diversity inferred from the mtDNA suggests that the genus is a complex of cryptic species whose conservational status should be re-evaluated on both the national and regional levels. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2010, 158, 629–640. REFERENCES Adams CC. 1902. Southeastern United States as a center for geographical distribution of flora and fauna. The Biological Bulletin 3: 115– 131. Akaike H. 1973. Information theory and an extension of the maximum–likelihood principle. In: BN Petrov, F Csaki, eds. Second International Symposium on Information Theory, Tsahkadzor, Armenia, USSR. Budapest: Akademiai Kiado, 267– 281. Alexander LF, Riddle BR. 2005. Phylogenetics of the New World rodent family Heteromyidae. Journal of Mammalogy 86: 366– 379. Alfaro ME, Arnold SJ. 2001. Molecular systematics and evolution of Regina and Thamnophine snakes. Molecular Phylogenetics and Evolution 21: 408– 423. Aranda M, Escobedo JE, Pozo C. 1997. Registros recientes de Otonychtomys hatti (Rodentia: Muridae) en Quintana Roo, Mexico. Acta Zoologica Mexicana (nueva serie) 72: 63– 65. Arevalo E, Davis SK, Sites JW. 1994. Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico. Systematic Biology 43: 387– 418. Baird SF, Girard C. 1852. Description of some new species of reptiles collected by the U.S. exploring expedition under the command of Captain Charles Wiles. U.S.N. Proceedings of the Academy of Natural Sciences, Philadelphia 6: 176. Beamer DA, Lamb T. 2008. Dusky salamanders (Desmognathus, Plethodontidae) from the coastal plain: multiple independent lineages and their bearing on the molecular phylogeny of the genus. Molecular Phylogenetics and Evolution 47: 143– 153. Blanchard FM. 1942. The Ringneck snakes, genus Diadophis. Bulletin of the Chicago Academy of Science 1: 1– 144. Blanchard FM, Gilreath M, Blanchard F. 1979. The eastern ring–neck snake (Diadophis punctatus edwardsii) in northern Michigan. Journal of Herpetology 13: 377– 402. Burbrink FT, Lawson R, Slowinski JB. 2000. Mitochondrial DNA phylogeography of the polytypic North American ratsnake (Elaphe obsolete): a critique of the subspecies concept. Evolution 54: 2107– 2118. Butler RS, Mayden RL. 2003. Cryptic biodiversity–rich biodiversity in the southeastern waters of the United States. Endangered Species Bulletin 28: 24– 26. Conant R, Collins JT. 1991. A field guide to the reptiles and amphibians: eastern and central North America. Boston: Houghton Mifflin Company. Cope ED. 1863. Synopsis of the species of Holcosus and Ameiva with diagnosis of new West Indian and South American Colubridae. Proc. Academy Natural Science Philadelphia 14: 60– 82. Cope ED. 1871. Ninth contribution to the herpetology of tropical America. Proceedings of the Academy of Natural Sciences, Philadelphia 23: 200– 224. Cothran EG, Zimmerman EG. 1985. Electrophoretic analysis of the contact zone between Geomys breviceps and Geomys bursarius. Journal of Mammalogy 66: 489– 497. Dorf E. 1959. Climatic changes of the past and present. Contributions from the Museum of Paleontology, University of Michigan 13: 181– 210. Drummond AJ, Rambaut A. 2006. BEAST v 1.4, Available at http://beast.bio.ed.ac.uk/ Ellsworth DL, Honeycutt RL, Silvy NJ, Bickham JW, Klimstra WD. 1994. Historical biogeography and contemporary patterns of mitochondrial DNA variation in white–tailed deer from the Southeastern United States. Evolution 48: 122– 136. Escalante T, Rodriguez G, Morrone JJ. 2004. The diversification of Nearctic mammals in the Mexican transition zone. Biological Journal of the Linnean Society 83: 327– 339. Escalante T, Sanches–Cordero V, Morrone JJ. 2007. Areas of endemism of Mexican terrestrial mammals: a case study using species' ecological niche modeling, parsimony analysis of endemicity and Goloboff fit. Interciencia 32: 151– 159. Felsenstein J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783– 791. Fontanella FM, Feldman CR, Siddall ME, Burbrink FT. 2008. Phylogeography of Diadophis punctatus: extensive lineage diversity and repeated patterns of historical demography in a trans–conterminous snake. Molecular Phylogenetics and Evolution 46: 1049– 1070. Gehlbach FR. 1965. Herpetology of the Zuni Mountains region, northwestern New Mexico. Proceedings of the Natural History Museum 116: 243– 332. Gloyd HK. 1940. The rattlesnakes, genera Sistrurus and Crotalus: a study in zoogeography and evolution. Special Publication No. 4. Chicago: Chicago Academy of Sciences. Goloboff PJ, Farris F, Nixon K. 2003. T.N.T.: tree analysis using new technology. Available at http://www.zmuc.dk/public/phylogeny/tnt Greene HW. 1997. Snakes: the evolution of mystery in nature. Berkeley: University of California Press. Gunther, A. 1860. Description of Leptodeira torquata, a new snake from Central America. Annals of Natural History Series 5: 169– 171. Haffner DJ, Riddle BR. 2005. Mammalian phylogeography and evolutionary history of northern Mexico's deserts. In: J–L Cartron, G Ceballos, RS Felger, eds. Biodiversity, ecosystems and conservation in Northern Mexico. New York: Oxford University Press, 225– 245. Halffter G. 1976. Distribucion de los insectos en la zona de transicion Meicana. Relaciones con la entomofauana de Norteamericana. Folia Entomologica Mexicana 35: 1– 64. Heilprin A. 1887. The geographical and geological distribution of animals. New York: D. Appleton. Hillis DM. 1981. Premating isolating mechanisms and adaptation of the larvae of Rana pipiens complex in Texas and southern Oklahoma. Copeia 1981: 312– 319. Holbrook JE. 1836. North American herpetology. Vol 1. Philadelphia; J. Dobson 120 pp. Holman JA. 1979. A review of North American Pleistocene snakes. Publication of the Museum, Michigan State University, (Paleontological Series) 1: 203– 260. Holman JA. 2000. Fossil snakes of North America. Origin, evolution, distribution, paleoecology. Indianapolis: Indiana University Press. Hubbs CL. 1936. Fishes of the Yucatan peninsula. Washington: Carnegie Institution of Washington Publication. Huidobro L, Morrone JJ, Villalobos JL, Alvarez F. 2006. Distributional patterns of freshwater taxa (fishes, crustaceans and plants) from the Mexican Transition Zone. Journal of Biogeography 33: 731– 741. Jaeger JR, Riddle BR, Bradford DF. 2005. Cryptic Neogene vicariance and Quaternary dispersal of the red–spotted toad (Bufo punctatus) insights on the evolution of North American warm desert biotas. Molecular Ecology 14: 3033– 3048. Klauber LM. 1972. Rattlesnakes: their life history, habits and influence on mankind, 2 volumes, 2nd edn. Berkeley: University of California Press. Latreille P. 1801. Histoire naturelle des reptiles. Pairs, 4 vols. Lawson R, Slowinski JB, Crother BI, Burbrink FT. 2005. Phylogeny of the Colubroidea (Serpentes): new evidence from mitochondrial and nuclear genes. Molecular Phylogenetics and Evolution 37: 581– 601. Lee TE, Riddle BR, Lee PL. 1996. Speciation in the desert pocket mouse (Chaetodipus penicillatus Woodhouse). Journal of Mammalogy 77: 58– 68. Linnaeus C. 1758. Systema Naturae, tenth edition. Holmiae. 1– 824. Linnaeus C. 1766. Systemat Naturae per Regna Tria Naturae, Secundum Classes Ordines, Genera, Species cum Characteribus, Differentilis, Synonymis, Locis. Tomus I. Editio duodecima, Reformata. Holmiae: L Salvii. Marshall CJ, Liebherr JK. 2000. Cladistic biogeography of the Mexican transition zone. Journal of Biogeography 27: 203– 216. Martin PS, Harrell BE. 1957. The Pleistocene history of temperate biotas in Mexico and Eastern United States. Ecology 3: 468– 480. Mendelson JR, Jennings WB. 1992. Shifts in the relative abundance of snakes in a desert grassland. Journal of Herpetology 2: 38– 45. Metcalf SE. 2006. Late quaternary environments of the northern deserts and central transvolcanic belt of Mexcio. Annals of the Missouri Botanical Garden 93: 258– 273. Metcalf SE, O'Hara SL, Caballero M, Davies SJ. 2000. Records of Late Pleistocene–Holocene climatic change in Mexico – a review. Quaternary Scientific Review 19: 699– 721. Moritz C. 1994. Defining 'evolutionary significant units' for conservation. Trends in Ecology and Evolution 9: 373– 375. Morrone JJ. 2006. Biogeographic areas and transition zones of Latin America and the Caribbean Islands based on panbiogeographic and cladistic analyses of the entomofauna. Annual Review of Entomology 51: 467– 494. Morrone JJ, Espinosa-Organista D, Llorente Bousquets J. 2002. Mexican biogeographic provinces: preliminary scheme, general characterizations, and synonyms. Acta Zoologica Mexicana (nueva serie) 85: 83– 108. Nason JD, Hamrick JL, Fleming TH. 2002. Historical vicariance and postglacial colonization effects on the evolution of genetic structure in Lophocereus, a Sonoran Desert columnar cactus. Evolution 56: 2214– 2226. Orange DI, Riddle BR, Nickle DC. 1999. Phylogeography of a wide–ranging desert lizard, Bambelia wislizenii (Crotaphytidae). Copeia 2: 267– 273. Outlaw DC, Voelker G, Mila B, Girman DJ. 2003. Evolution of long–distance migration in and historical biogeography of Catharus thrushes: a molecular phylogenetic approach. The Auk 120: 299– 310. Pinou T, Vicario S, Marschner M, Caccone A. 2004. Relict snakes of North America and their relationships within Caenophidia, using likelihood–based Bayesian methods on mitochondrial sequences. Molecular Phylogenetics and Evolution 32: 563– 574. Place AJ, Abramson CI. 2004. A quantitative analysis of the ancestral area of rattlesnakes. Journal of Herpetology 38: 151– 156. Posada D, Crandall KA. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817– 818. Reinhardt J, Lutken CF. 1863. Bidrag til Kundskab om Brasiliens Padder og Krybdyr. Viedenskabelige Meddelesle fra den Naturhistorisk Forening I Kjobenhavn 3: 143– 242. Riddle BR, Hafner DJ. 2006. A step–wise approach to integrating phylogeographic and phylogenetic biogeographic perspectives on the history of a core North American warm deserts biota. Journal of Arid Environments 66: 435– 461. Riddle BR, Honeycutt RL. 1990. Historical biogeography in North American arid regions: an approach using mitochondrial DNA phylogeny in grasshopper mice (genus Onychomys). Evolution 44: 1– 15. Ronquist F. 1996. DIVA version 1.1 Computer program and manual. Available from Uppsala University at: http://www.ebc.uu.se/systzoo/research/diva/diva.html Rosen DE. 1978. Vicariant patterns and historical explanation in biogeography. Systematic Zoology 27: 159– 188. Ruthven AG. 1908. Variations and genetic relationships of the gartersnakes. Bulletin of the U. S. National Museum 61: 1– 201. Santacruz-Varela A, Widrlechner P, Ziegler KE, Salvador RJ, Millard MJ, Bretting PK. 2004. Phylogenetic relationships among North American popcorns and their evolutionary links to Mexican and South American popcorns. Crop Science 44: 1456– 1467. Shankman D, Hart JL. 2007. The fall line: a physiographic–forest vegetation boundary. Geographical Review 97: 502– 519. Shimodaira H. 2002. An approximately unbiased test of phylogenetic tree selection. Systematic Biology 51: 492– 508. Shimodaira H, Hasegawa M. 1999. Multiple comparisons of log–likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16: 1114– 1116. Shimodaira H, Hasegawa M. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17: 1246– 1247. Soltis DE, Morris AB, McLachlan JS, Manos PS, Soltis PS. 2006. Comparative phylogeography of unglaciated eastern North America. Molecular Ecology 15: 4261– 4293. Stamatakis A. 2006. RaxML–VI–HPC: maximum likelihood–based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688– 2690. Stamatakis A, Hoover P, Rougemont J. 2008. A rapid bootstrap algorithm for the RAxML Web–Servers. Systematic Biology 57: 758– 771. Stangl FB. 1986. Aspects of a contact zone between two chromosomal races of Peromyscus leucopus (Rodentia: Cricetidae). Journal of Mammalogy 67: 465– 473. Stebbins RC. 1985. A field guide to western reptiles and amphibians. Boston, MA: Houghton Mifflin. Swofford DL. 2001. PAUP*; phylogenetic analyses using parsimony (*and other methods), Version 4. Sunderland, MA: Sineauer Associates. Upton DE, Murphy RW. 1997. Phylogeny of the side–blotched lizards (Phrynosomatideae: Uta) based on mtDNA sequences: support for a mid–peninsular seaway in Baja California. Molecular Phylogenetics and Evolution 8: 104– 113. Wallace AR. 1876. The geographical distribution of animals, with a study of the relations of living and extinct faunas as elucidating the past changes of the earth's surface. London: MacMillan. Waltari E, Hijmans RJ, Peterson AT, Nyari AS, Perkins SL, Guralnick RP. 2007. Locating Pleistocene refugia: comparing phylogeographic and ecological niche model predictions. PLoS ONE 7: e563. Webb SD, Wilkins KT. 1984. Historical biogeography of Florida Pleistocene mammals. In: HH Genoways, MR Dawson, eds. Contributions in quaternary vertebrate paleontology: a volume in memorial to John E. Guilday. Special Publication No. 8. Washington: Carnegie Museum of Natural History, 370– 383. Wikler K, Gordon TR. 2000. An initial assessment of genetic relationships among populations of Fusarium circinatum in different parts of the world. Canadian Journal of Botany 78: 709– 717. Wiley EO. 1976. The phylogeny and biogeography of fossil and recent gars (Actinopterygii: Lepisosteidae). Miscellaneous Publications of the Museum of Natural History University of Kansas 64: 1– 111. Zhang DX, Hewitt GM. 1996. Nuclear integrations: challenges for mitochondrial DNA markers. Trends in Ecology and Evolution 11: 247– 251. Zink RM. 2002. Methods in comparative phylogeography, and their application to studying evolution in the North American aridlands. Integrative and Comparative Biology 42: 953– 959. Zink RM, Blackwell RC. 1998. Molecular systematics and biogeography of arid–land gnatcatchers (Genus Polioptila) and evidences supporting species status of the California gnatcatcher (Polioptila californica). Molecular Phylogenetics and Evolution 9: 26– 32. Supporting Information Appendix S1. Mexico Paper Samples. Please note: Wiley-Blackwell are not responsible for the content or functionality of any supporting materials supplied by the authors. Any queries (other than missing material) should be directed to the corresponding author for the article. Filename Description ZOJ_554_sm_Appendix_S1.pdf19.2 KB Supporting info item Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article. Volume158, Issue3March 2010Pages 629-640 ReferencesRelatedInformation

Referência(s)