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Population genetic structure of the salmon louse, Lepeophtheirus salmonis (Krøyer) on wild and farmed salmonids around the Pacific coast of Canada

2009; Wiley; Volume: 40; Issue: 8 Linguagem: Inglês

10.1111/j.1365-2109.2008.02159.x

1365-2109

Elizabeth G. Boulding, Jeremy R deWaard, Keng Pee Ang, PaulD N Hebert,

Genetic diversity and population structure

Appendix S1. Abundances of 45 different COI haplotypes of the salmon louse sampled from nine different geographical locations (Table 1). Populations with a y suffix (Online Appendix 3). Appendix S2. Sequence of COI haplotypes of the 45 haplotypes used in our population structure analysis. The haplotype number and sequence at bottom of a group applies to all of the sample IDs just above it. Appendix S3. Correspondence between BIO Process IDs and GenBank accession numbers and names for 20 salmon lice samples from Vancouver Island, British Columbia from Yazawa et al. (2008). EU288204.1 was not used in the TCS haplotype network analysis because it has such a high sequence divergence that we suspect that it may be a different taxon. Appendix S4. Exact Test of Sample Differentiation Based on Haplotype Frequencies using Parsimony informative sites within 658 bp "BIO barcoding" portion of COI sequences published by Tjensvoll et al. 2006 Appendix S5. A neighbour-joining tree (Kimura two parameter distance) of COI haplotypes labelled with the collection locations of individual salmon louse, Lepeophtheirus salmonis (Krøyer). The DNA sequence from each salmon louse is indicated by a BOLD Processing Sample Labels with their GenBank accession number following the vertical line. Sample labels beginning with SLOBC are new sequences from the current study (Table 1). The 54 samples prefixed with GGBSL are from throughout the Pacific Ocean (for map see Figure 1 in Yazawa et al 2008) comprise: EU288201-EU288216, EU288244-EU288246, EU288250-EU288251 from British Columbia, Canada (N=20, see Online Appendix 3); EU288218-EU288230 Bering Sea (N=9); EU288231-EU288243, EU288247-EU288249 Alaska, United States (N=13); EU288252-EU288263 Hokkaido, Japan (N=12). The 180 Samples prefixed with GGBCX are from the Atlantic Ocean (Tjensvoll et al., 2006) and comprise: AY602587-AY602616 from Finmark, Norway (N=30); AY602617-AY602646 from Sogn og Fjordane, Norway (N=30); AY602647-AY602676 from Øst-Agder, Norway (N=30); AY602677-AY602706 from the Isle of Skye, Scotland (N=30); AY602707-AY602736 are from the Republic of Komi, Russia (N=30), and AY602737-AY602766 from New Brunswick, Canada (N=30). Please note: Wiley-Blackwell are not responsible for the content or functionality of any supporting materials supplied by the authors. Any queries (other than missing material) should be directed to the corresponding author for the article. Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article.