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mMass data miner: an open source alternative for mass spectrometric data analysis

2008; Wiley; Volume: 22; Issue: 6 Linguagem: Inglês

10.1002/rcm.3444

1097-0231

Martin Strohalm, Martin Hassman, Bedřich Košata, Milan Kodı́ček,

Metabolomics and Mass Spectrometry Studies

Rapid Communications in Mass SpectrometryVolume 22, Issue 6 p. 905-908 Letter to the Editor mMass data miner: an open source alternative for mass spectrometric data analysis Martin Strohalm, Corresponding Author Martin Strohalm [email protected] Institute of Chemical Technology, Technická 5, Prague 16628, Czech RepublicInstitute of Chemical Technology, Technická 5, Prague 16628, Czech Republic.Search for more papers by this authorMartin Hassman, Martin Hassman Institute of Chemical Technology, Technická 5, Prague 16628, Czech RepublicSearch for more papers by this authorBedřich Košata, Bedřich Košata Institute of Chemical Technology, Technická 5, Prague 16628, Czech RepublicSearch for more papers by this authorMilan Kodíček, Milan Kodíček Institute of Chemical Technology, Technická 5, Prague 16628, Czech RepublicSearch for more papers by this author Martin Strohalm, Corresponding Author Martin Strohalm [email protected] Institute of Chemical Technology, Technická 5, Prague 16628, Czech RepublicInstitute of Chemical Technology, Technická 5, Prague 16628, Czech Republic.Search for more papers by this authorMartin Hassman, Martin Hassman Institute of Chemical Technology, Technická 5, Prague 16628, Czech RepublicSearch for more papers by this authorBedřich Košata, Bedřich Košata Institute of Chemical Technology, Technická 5, Prague 16628, Czech RepublicSearch for more papers by this authorMilan Kodíček, Milan Kodíček Institute of Chemical Technology, Technická 5, Prague 16628, Czech RepublicSearch for more papers by this author First published: 22 February 2008 https://doi.org/10.1002/rcm.3444Citations: 385Read the full textAboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Share a linkShare onEmailFacebookTwitterLinkedInRedditWechat REFERENCES 1 Matrix Science. Available: http://www.matrixscience.com/ (accessed November 2007). 2 Protein Prospector. Available: http://prospector.ucsf.edu/ (accessed November 2007). 3ProFound - Peptide Mapping. Available: http://www.unb.br/cbsp/paginiciais/profound.htm (accessed November 2007). 4ExPASy - Aldente Peptide Mass Fingerprinting tool. Available: http://www.expasy.org/tools/aldente/ (accessed November 2007). 5Peri S, Steen H, Pandey A. Trends Biochem Sci. 2001; 26: 687. 6Rusconi F, Belghazi M. Bioinformatics 2002; 18: 644. 7Orchard S, Taylor C, Hermjakob H, Zhu W, Julian R, Apweiler R. Expert Rev. Proteomics 2004; 1: 179. 8Orchard S, Hermjakob H, Taylor CF, Potthast F, Jones P, Zhu W, Julian RK Jr, Apweiler R. Proteomics 2005; 5: 3552. 9PSI-MS: Mass Spectrometry Standards Working Group. Available: http://www.psidev.info/ (accessed November 2007). 10Pedrioli PG, Eng JK, Hubley R, Vogelzang M, Deutsch EW, Raught B, Pratt B, Nilsson E, Angeletti RH, Apweiler R, Cheung K, Costello CE, Hermjakob H, Huang S, Julian RK, Kapp E, McComb ME, Oliver SG, Omenn G, Paton NW, Simpson R, Smith R, Taylor CF, Zhu W, Aebersold R. Nat. Biotechnol. 2004; 22: 1459. 11Lin SM, Zhu L, Winter AQ, Sasinowski M, Kibbe WA. Expert Rev Proteomics 2005; 2: 839. 12Sashimi project. Available: http://sashimi.sourceforge.net/ (accessed November 2007). 13Mann M. Proc. 43rd ASMS Conf. Mass Spectrometry and Allied Topics, 21-26 May, Atlanta, GA, 1995; 639. 14Karty JA, Ireland MM, Brun YV, Reilly JP. J. Chromatogr. B 2002; 782: 363. 15UNIMOD protein modifications for mass spectrometry. Available: http://www.unimod.org/ (accessed November 2007). 16Mass Spectrometry and Biotechnology Resource. Available: http://www.ionsource.com/ (accessed November 2007). 17PSI-MS: Support for mzData. Available: http://www.psidev.info/index.php?q=node/95 (accessed November 2007). 18Avaialble: http://mmass.biographics.cz. Citing Literature Volume22, Issue630 March 2008Pages 905-908 ReferencesRelatedInformation