Artigo Acesso aberto Revisado por pares

Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method

2008; American Physical Society; Volume: 100; Issue: 2 Linguagem: Inglês

10.1103/physrevlett.100.020603

ISSN

1092-0145

Autores

Alessandro Barducci, Giovanni Bussi, Michele Parrinello,

Tópico(s)

Protein Structure and Dynamics

Resumo

We present a method for determining the free-energy dependence on a selected number of collective variables using an adaptive bias. The formalism provides a unified description which has metadynamics and canonical sampling as limiting cases. Convergence and errors can be rigorously and easily controlled. The parameters of the simulation can be tuned so as to focus the computational effort only on the physically relevant regions of the order parameter space. The algorithm is tested on the reconstruction of an alanine dipeptide free-energy landscape.

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