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On the Usage of HWE for Identifying Genotyping Errors

2007; Wiley; Volume: 71; Issue: 5 Linguagem: Inglês

10.1111/j.1469-1809.2007.00356.x

1469-1809

Yik Ying Teo, Andrew E. Fry, Taane G. Clark, E. Shyong Tai, Mark Seielstad,

Genomics and Rare Diseases

Annals of Human GeneticsVolume 71, Issue 5 p. 701-703 On the Usage of HWE for Identifying Genotyping Errors Yik Y. Teo, Corresponding Author Yik Y. Teo Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK *Corresponding author: E-mail: [email protected]Search for more papers by this authorAndrew E. Fry, Andrew E. Fry Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UKSearch for more papers by this authorTaane G. Clark, Taane G. Clark Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UKSearch for more papers by this authorE. S. Tai, E. S. Tai Singapore General Hospital, Outram Road, Singapore 169608Search for more papers by this authorMark Seielstad, Mark Seielstad Genome Institute of Singapore, Agency for Science, Technology and Research, 60 Biopolis Street, #02-01, Genome, Singapore 138672Search for more papers by this author Yik Y. Teo, Corresponding Author Yik Y. Teo Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UK *Corresponding author: E-mail: [email protected]Search for more papers by this authorAndrew E. Fry, Andrew E. Fry Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UKSearch for more papers by this authorTaane G. Clark, Taane G. Clark Wellcome Trust Centre for Human Genetics, University of Oxford, Roosevelt Drive, Oxford OX3 7BN, UKSearch for more papers by this authorE. S. Tai, E. S. Tai Singapore General Hospital, Outram Road, Singapore 169608Search for more papers by this authorMark Seielstad, Mark Seielstad Genome Institute of Singapore, Agency for Science, Technology and Research, 60 Biopolis Street, #02-01, Genome, Singapore 138672Search for more papers by this author First published: 27 March 2007 https://doi.org/10.1111/j.1469-1809.2007.00356.xCitations: 39Read the full textAboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Share a linkShare onEmailFacebookTwitterLinkedInRedditWechat References Affymetrix Inc. (2006a) Data sheet: GeneChip Human Mapping 500K Array Set. http://www.affymetrix.com/support/technical/datasheets/500k_datasheet.pdf Affymetrix Inc. (2006b) BRLMM: an improved genotype calling method for the GeneChip Human Mapping 500K Array Set. http://www.affymetrix.com/support/technical/whitepapers/brlmm_whitepaper.pdf Clayton, D.G., Walker, N.M., Smyth, D.J., Pask, R., Cooper, J.D., Maier, L.M., Smink, L.J. et al. (2005) Population structure, differential bias and genomic control in a large-scale, case-control association study. Nat Genet 37, 1243–1246. Cox, D.G. & Kraft, P. (2006) Quantification of the power of Hardy-Weinberg equilibrium testing to detect genotyping error. Hum Hered 61, 10–14. Hosking, L., Lumsden, S., Lewis, K., Yeo, A., McCarthy, L., Bansal, A., Riley, J. et al. (2004) Detection of genotyping errors by Hardy-Weinberg equilibrium testing. Eur J Hum Genet 12, 395–399. Illumina Inc. (2006) Data sheet: Sentrix HumanHap550 Genotyping BeadChip. http://www.illumina.com/General/pdf/HUMANHAP550_DataSheet.pdf Kang, S.J., Gordon, D. & Finch, S.J. (2004) What SNP genotyping errors are most costly for genetic association studies? Genet Epi 26, 132–141. Leal, S.M. (2005) Detection of genotyping errors and pseudo-SNPs via deviations from Hardy-Weinberg equilibrium. Genet Epidemiol 29, 204–214. Sun, H.S., Tsai, H.W., Ko, H.C., Chang, F.M., & Yeh, T.L. (2004) Association of trypotphan hydroxylase gene polymorphism with depression, anxiety and comorbid depression and anxiety in a population-based sample of postpartum Taiwanese women. Genes, Brain and Behav 3, 328–336. Zorzetto, M., Bombieri, C., Ferrarotti, I., Medaglia, S., Agostini, C., Tinelli, C., Malerba, G. et al. (2002) Complement receptor 1 gene polymorphisms in sarcoidosis. Am J Respir Cell Mol Biol 27, 17–23. Zou, G.Y. & Donner, A. (2006) The merits of testing Hardy-Weinberg equilibrium in the analysis of unmatched case-control data: a cautionary note. Ann Hum Genet 70, 923–933. Citing Literature Volume71, Issue5September 2007Pages 701-703 ReferencesRelatedInformation