Artigo Acesso aberto Revisado por pares

Sensitive and rapid detection of Alicyclobacillus acidoterrestris using loop-mediated isothermal amplification

2011; Wiley; Volume: 91; Issue: 6 Linguagem: Inglês

10.1002/jsfa.4285

ISSN

1097-0010

Autores

Jing Chen, Xiaoyan Ma, Yaowu Yuan, Wei Zhang,

Tópico(s)

Bacteriophages and microbial interactions

Resumo

Journal of the Science of Food and AgricultureVolume 91, Issue 6 p. 1070-1074 Research Article Sensitive and rapid detection of Alicyclobacillus acidoterrestris using loop-mediated isothermal amplification Jing Chen, Jing Chen College of Food Science and Technology, Agricultural University of Hebei, ChinaSearch for more papers by this authorXiaoyan Ma, Xiaoyan Ma College of Food Science and Technology, Agricultural University of Hebei, ChinaSearch for more papers by this authorYaowu Yuan, Yaowu Yuan College of Food Science and Technology, Agricultural University of Hebei, ChinaSearch for more papers by this authorWei Zhang, Corresponding Author Wei Zhang [email protected] College of Food Science and Technology, Agricultural University of Hebei, ChinaCollege of Food Science and Technology, Agricultural University of Hebei, No.2596, Lekai Street (South), Baoding City, Hebei province, 071001, China.Search for more papers by this author Jing Chen, Jing Chen College of Food Science and Technology, Agricultural University of Hebei, ChinaSearch for more papers by this authorXiaoyan Ma, Xiaoyan Ma College of Food Science and Technology, Agricultural University of Hebei, ChinaSearch for more papers by this authorYaowu Yuan, Yaowu Yuan College of Food Science and Technology, Agricultural University of Hebei, ChinaSearch for more papers by this authorWei Zhang, Corresponding Author Wei Zhang [email protected] College of Food Science and Technology, Agricultural University of Hebei, ChinaCollege of Food Science and Technology, Agricultural University of Hebei, No.2596, Lekai Street (South), Baoding City, Hebei province, 071001, China.Search for more papers by this author First published: 18 February 2011 https://doi.org/10.1002/jsfa.4285Citations: 14Read the full textAboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Share a linkShare onEmailFacebookTwitterLinkedInRedditWechat Abstract BACKGROUND: A loop-mediated isothermal amplification (LAMP) assay was developed for the rapid detection (within 2 h) of Alicyclobacillus acidoterrestris. The assay detected the species-specific DNA sequence of the 16S–23S rRNA internal transcribed spacer. RESULTS: The eight strains of A. acidoterrestris were successfully amplified, but six strains of other bacillus Acidocaldarius and 13 bacterial species other than bacillus Acidocaldarius were not. The sensitivity of the LAMP assay was at 4.50 × 10−2 cfu per tube. This sensitivity is greater than that obtained by polymerase chain reaction (PCR) assay. The LAMP assay was examined further for its ability to detect A. acidoterrestris in juice samples. The results were compared with those of conventional PCR detection. CONCLUSION: Results indicate that the proposed LAMP assay is a rapid, specific and sensitive method for detecting A. acidoterrestris. As the amplification has been conducted under isothermal conditions, only a water bath or heating block is needed to maintain the required temperature. Thus, the method can be generalised and popularised easily in the future. Copyright © 2011 Society of Chemical Industry REFERENCES 1Wisotzkey JD, Jurtshuk PJ, Fox GE, Deinhard G and Poralla K, Comparative sequence analyses on the 16S rRNA (rDNA) of Bacillus acidocaldarius, Bacillus acidoterrestris, and Bacillus cycloheptanicus and proposal for creation of a new genus, Alicyclobacillus gen. nov. Int J Syst Bacteriol 42: 263–269 (1992). 2Goto K, Mochida KM, Asahara M, Suzuki M and Yokota A, Application of the hypervariable region of the 16S rDNA sequence as an index for the rapid identification of species in the genus Alicyclobacillus. J Gen Appl Microbiol 48: 243–250 (2002). 3Matsubara H, Goto K, Matsumura T, Mochida K, Iwaki M, Niwa M, et al, Alicyclobacillus acidiphilus sp. nov., a novel thermo-acidophilic, omega-alicyclic fatty acid-containing bacterium isolated from acidic beverages. Int J Syst Evol Microbiol 52: 1681–1685 (2002). 4Walls I and Chuyate R, Isolation of Alicyclobacillus acidoterrestris from fruit juices. J AOAC Int 83: 1115–1120 (2000). 5Groenewald WH, Gouws PA and Witthuhn RC, Isolation, identification and typification of Alicyclobacillus acidoterrestris and Alicyclobacillus acidocaldarius strains from orchard soil and the fruit processing environment in South Africa. Food Microbiol 26: 71–76 (2009). 6Yamazaki K, Teduka H and Shinano H, Isolation and identification of Alicyclobacillus acidoterrestris from acidic beverages. Biosci Biotechnol Biochem 60: 543–545 (1996). 7Pettipher GL, Osmundson ME and Murphy JM, Methods for the detection and enumeration of Alicyclobacillus acidoterrestris and investigation of growth and production of taint in fruit juice and fruit juice-containing drinks. Lett Appl Microbiol 24: 185–189 (1997). 8Orr RV, Shewfelt RL, Huang CJ, Tefera S and Beuchat LR, Detection of guaiacol produced by Alicyclobacillus acidoterrestris in apple juice by sensory and chromatographic analyses, and comparison with spore and vegetative cell populations. J Food Prot 63: 1517–1522 (2000). 9Nagamine K, Watanabe K, Ohtsuka K, Hase T and Notomi T, Loop-mediated isothermal amplification reaction using a nondenatured template. Clin Chem 47: 1742–1743 (2001). 10Notomi T, Okayama H, Masubuchi H, Yonekawa T, Watanabe K, Amino N, et al, Loop-mediated isothermal amplification of DNA. Nucleic Acids Res 28: E63 (2000). 11Nagamine K, Kuzuhara Y and Notomi T, Isolation of single-stranded DNA from loop-mediated isothermal amplification products. Biochem Biophys Res Commun 290: 1195–1198 (2002). 12Aoi Y, Hosogai M and Tsuneda S, Real-time quantitative LAMP (loop-mediated isothermal amplification of DNA) as a simple method for monitoring ammonia-oxidizing bacteria. J Biotechnol 125: 484–491 (2006). 13Zerilli F, Bonanno C, Shehi E, Amicarelli G, Adlerstein D and Makrigiorgos GM, Methylation-specific loop-mediated isothermal amplification for detecting hypermethylated DNA in simplex and multiplex formats. Clin Chem 56: 1287–1296 (2010). 14Lam L, Sakakihara S, Ishizuka K, Takeuchi S, Arata HF, Fujita H, et al, Loop-mediated isothermal amplification of a single DNA molecule in polyacrylamide gel-based microchamber. Biomed Microdevices 10: 539–546 (2008). 15Matovu E, Kuepfer I, Boobo A, Kibona S and Burri C, Comparative detection of trypanosomal DNA by loop-mediated isothermal amplification and PCR from flinders technology associates cards spotted with patient blood. J Clin Microbiol 48: 2087–2090 (2010). 16Takagi H, Itoh M, Islam MZ, Razzaque A, Ekram AR, Hashighuchi Y, et al, Sensitive, specific, and rapid detection of Leishmania donovani DNA by loop-mediated isothermal amplification. Am J Trop Med Hyg 81: 578–582 (2009). 17Nagamine K, Hase T and Notomi T, Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol Cell Probes 16: 223–229 (2002). 18Goto K, Mochida K, Kato Y, Asahara M, Fujita R, An SY, et al, Proposal of six species of moderately thermophilic, acidophilic, endospore-forming bacteria: Alicyclobacillus contaminans sp. nov., Alicyclobacillus fastidiosus sp. nov., Alicyclobacillus kakegawensis sp. nov., Alicyclobacillus macrosporangiidus sp. nov., Alicyclobacillus sacchari sp. nov. and Alicyclobacillus shizuokensis sp. nov. Int J Syst Evol Microbiol 57: 1276–1285 (2007). 19Bae YY, Lee HJ, Kim SA and Rhee MS, Inactivation of Alicyclobacillus acidoterrestris spores in apple juice by supercritical carbon dioxide. Int J Food Microbiol 136: 95–100 (2009). 20Grasso EM, Yousef AE, de Lamo CS and Rodriguez-Saona LE, Rapid detection and differentiation of Alicyclobacillus species in fruit juice using hydrophobic grid membranes and attenuated total reflectance infrared microspectroscopy. J Agric Food Chem 57: 10670–10674 (2009). 21Chang SS and Kang DH, Alicyclobacillus spp. in the fruit juice industry: history, characteristics, and current isolation/detection procedures. Crit Rev Microbiol 30: 55–74 (2004). 22Barrios EK, Salazar-Banda GR, Funes-Huacca ME, Alberice JV, Carrilho E, Spinola MS, et al, Sequence-specific electrochemical detection of Alicyclobacillus acidoterrestris DNA using electroconductive polymer-modified fluorine tin oxide electrodes. Analyst 134: 314–319 (2009). Citing Literature Volume91, Issue6April 2011Pages 1070-1074 ReferencesRelatedInformation

Referência(s)