A Computer Program Designed to Screen Rapidly for HIV Type 1 Intersubtype Recombinant Sequences
1995; Mary Ann Liebert, Inc.; Volume: 11; Issue: 11 Linguagem: Inglês
10.1089/aid.1995.11.1413
ISSN1931-8405
AutoresAdam Siepel, Aaron L. Halpern, Catherine A. Macken, Bette Korber,
Tópico(s)Mosquito-borne diseases and control
ResumoAIDS Research and Human RetrovirusesVol. 11, No. 11 A Computer Program Designed to Screen Rapidly for HIV Type 1 Intersubtype Recombinant SequencesADAM C. SIEPEL, AARON L. HALPERN, CATHERINE MACKEN, and BETTE T.M. KORBERADAM C. SIEPEL, AARON L. HALPERN, CATHERINE MACKEN, and BETTE T.M. KORBERPublished Online:16 Mar 2009https://doi.org/10.1089/aid.1995.11.1413AboutSectionsPDF/EPUB Permissions & CitationsPermissionsDownload CitationsTrack CitationsAdd to favorites Back To Publication ShareShare onFacebookTwitterLinked InRedditEmail FiguresReferencesRelatedDetailsCited byCombining molecular network analysis and field epidemiology to quantify local HIV transmission and highlight ongoing epidemicsInternational Journal of Infectious Diseases, Vol. 128Molecular Network Analysis Discloses the Limited Contribution to HIV Transmission for Patients with Late HIV Diagnosis in Northeast China20 December 2022 | Archives of Sexual Behavior, Vol. 52, No. 2Molecular Epidemiology of HIV-1 in Ghana: Subtype Distribution, Drug Resistance and Coreceptor Usage31 December 2022 | Viruses, Vol. 15, No. 1Progressive transformation of the HIV-1 reservoir cell profile over two decades of antiviral therapyCell Host & Microbe, Vol. 31, No. 1Characterization of a novel HIV-1 circulating recombinant form, CRF91_cpx, comprising CRF02_AG, G, J, and U, mostly among men who have sex with men18 August 2022 | Virulence, Vol. 13, No. 1Antiretroviral therapy resistance mutations among HIV infected people in Kazakhstan13 October 2022 | Scientific Reports, Vol. 12, No. 1High Level of Pretreatment and Acquired Human Immunodeficiency Virus Drug Resistance in El Salvador: A Nationally Representative Survey, 2018–20193 November 2022 | Open Forum Infectious Diseases, Vol. 9, No. 11Molecular Epidemiology of HIV-1 in Eastern Europe and Russia22 September 2022 | Viruses, Vol. 14, No. 10Molecular Epidemiology and Trends in HIV-1 Transmitted Drug Resistance in Mozambique 1999–20189 September 2022 | Viruses, Vol. 14, No. 9High-level resistance to non-nucleos(t)ide reverse transcriptase inhibitor based first-line antiretroviral therapy in Ghana; A 2017 study25 August 2022 | Frontiers in Microbiology, Vol. 13The Molecular Epidemiological and Immunological Characteristics of HIV-1 CRF01_AE/B Recombinants in Nanjing, China15 July 2022 | Frontiers in Microbiology, Vol. 13Attenuated HIV-1 Nef But Not Vpu Function in a Cohort of Rwandan Long-Term Survivors16 June 2022 | Frontiers in Virology, Vol. 2An accurate method for identifying recent recombinants from unaligned sequences13 January 2022 | Bioinformatics, Vol. 38, No. 7The emergence and transmission dynamics of HIV-1 CRF07_BC in Mainland China17 February 2022 | Virus Evolution, Vol. 8, No. 1Drug Resistance Mutations in a Population Before Antiretroviral Therapy Initiation in Northern South Africa Bixa Ogola, Nontokozo D. Matume, Lufuno G. Mavhandu-Ramarumo, Denis M. Tebit, and Pascal O. Bessong8 March 2022 | AIDS Research and Human Retroviruses, Vol. 38, No. 3Pre‐treatment and acquired antiretroviral drug resistance among people living with HIV in Tianjin, China15 March 2022 | HIV Medicine, Vol. 23, No. S1Characterization of Near Full-Length Transmitted/Founder HIV-1 Subtype D and A/D Recombinant Genomes in a Heterosexual Ugandan Population (2006–2011)7 February 2022 | Viruses, Vol. 14, No. 2Molecular Network Analysis Reveals Transmission of HIV-1 Drug-Resistant Strains Among Newly Diagnosed HIV-1 Infections in a Moderately HIV Endemic City in China7 January 2022 | Frontiers in Microbiology, Vol. 12Analysis of Simian Endogenous Retrovirus (SERV) Full-Length Proviruses in Old World Monkey Genomes10 January 2022 | Genes, Vol. 13, No. 1Evolutionary dynamics of HIV-1 subtype C in Brazil29 November 2021 | Scientific Reports, Vol. 11, No. 1Characterization of HIV-1 Epidemic in Kyrgyzstan15 October 2021 | Frontiers in Microbiology, Vol. 12Fundamental evolution of all Orthocoronavirinae including three deadly lineages descendent from Chiroptera‐hosted coronaviruses: SARS‐CoV, MERS‐CoV and SARS‐CoV‐226 April 2021 | Cladistics, Vol. 37, No. 5Longitudinal typing of molecular HIV clusters in a statewide epidemic25 May 2021 | AIDS, Vol. 35, No. 11Acquisition and transmission of HIV-1 among migrants and Chinese in Guangzhou, China from 2008 to 2012: Phylogenetic analysis of surveillance dataInfection, Genetics and Evolution, Vol. 92An Amino Acid Polymorphism within the HIV-1 Nef Dileucine Motif Functionally Uncouples Cell Surface CD4 and SERINC5 DownregulationJournal of Virology, Vol. 95, No. 16First Assessment of Acquired HIV-1 Drug Resistance and Mutation Patterns in Suriname Rachel Sno, Mergiory Y. Labadie-Bracho, Meritha G. Grünberg, and Malti R. Adhin1 July 2021 | AIDS Research and Human Retroviruses, Vol. 37, No. 7Human Immunodeficiency Virus (HIV) Drug Resistance, Phylogenetic Analysis, and Superinfection Among Men Who Have Sex with Men and Transgender Women in Sub-Saharan Africa: HIV Prevention Trials Network (HPTN) 075 Study6 August 2020 | Clinical Infectious Diseases, Vol. 73, No. 1Phylodynamic analysis reveals changing transmission dynamics of HIV-1 CRF01_AE in Japan from heterosexuals to men who have sex with menInternational Journal of Infectious Diseases, Vol. 108Pre-treatment integrase inhibitor resistance is uncommon in antiretroviral therapy-naive individuals with HIV-1 subtype A1 and D infections in Uganda23 February 2021 | AIDS, Vol. 35, No. 7The Identification of A Novel HIV-1 Second-Generation Recombinant form (CRF01_AE/CRF07_BC) Among Men Who Have Sex with Men in Jiangsu, ChinaCurrent HIV Research, Vol. 19, No. 2First complete-genome documentation of HIV-1 intersubtype superinfection with transmissions of diverse recombinants over time to five recipients12 February 2021 | PLOS Pathogens, Vol. 17, No. 2HIV-1 Gag-Pol Sequences from Ugandan Early Infections Reveal Sequence Variants Associated with Elevated Replication Capacity23 January 2021 | Viruses, Vol. 13, No. 2Complicated genotypes circulating among treatment naïve HIV-1 patients in Guangzhou, ChinaInfection, Genetics and Evolution, Vol. 87Tracing the transmission dynamics of HIV-1 CRF55_01B20 March 2020 | Scientific Reports, Vol. 10, No. 1Longitudinal characterization of HIV-1 pol-gene in treatment-naïve men-who-have-sex-with-men from acute to chronic infection stagesHeliyon, Vol. 6, No. 12Phylogenetic Analysis of Human Immunodeficiency Virus from People Who Inject Drugs in Indonesia, Ukraine, and Vietnam: HPTN 0743 December 2019 | Clinical Infectious Diseases, Vol. 71, No. 8Migration interacts with the local transmission of HIV in developed trade areas: A molecular transmission network analysis in ChinaInfection, Genetics and Evolution, Vol. 84Patterns of acquired HIV-1 drug resistance mutations and predictors of virological failure in Moshi, Northern Tanzania28 September 2020 | PLOS ONE, Vol. 15, No. 9Distinct viral reservoirs in individuals with spontaneous control of HIV-126 August 2020 | Nature, Vol. 585, No. 7824Emergence of SARS-CoV-2 through recombination and strong purifying selectionScience Advances, Vol. 6, No. 27High level of pre-treatment and acquired HIV drug resistance in Honduras: a nationally representative survey, 2016–1717 April 2020 | Journal of Antimicrobial Chemotherapy, Vol. 75, No. 7Differential Vpu-Mediated CD4 and Tetherin Downregulation Functions among Major HIV-1 Group M SubtypesJournal of Virology, Vol. 94, No. 14HIV-1 pol gene diversity and molecular dating of subtype C from Sri Lanka11 June 2020 | PLOS ONE, Vol. 15, No. 6GENETIC ANALYSIS OF HIV-1 IN THE ALTAI KRAY: THE FURTHER SPREAD OF THE CRF63_02A1 VARIANT IN WESTERN SIBERIA26 May 2020 | HIV Infection and Immunosuppressive Disorders, Vol. 12, No. 1The Central Role of Nondisclosed Men Who Have Sex With Men in Human Immunodeficiency Virus-1 Transmission Networks in Guangzhou, China6 May 2020 | Open Forum Infectious Diseases, Vol. 7, No. 5Emergence of HIV-1 Unique DG Recombinant Form in Pakistan Uroosa Tariq, Faisal Mahmood, Sadaf Naeem, Syed Ali, and Syed Hani Abidi3 March 2020 | AIDS Research and Human Retroviruses, Vol. 36, No. 3HIV drug resistance in a cohort of HIV-infected MSM in the United StatesAIDS, Vol. 34, No. 1Near full-length HIV-1 subtype B sequences from the early South African epidemic, detecting a BD unique recombinant form (URF) from a sample in 198517 April 2019 | Scientific Reports, Vol. 9, No. 1Rapid and complicated HIV genotype expansion among high-risk groups in Guangdong Province, China22 February 2019 | BMC Infectious Diseases, Vol. 19, No. 1Moderate prevalence of HIV-1 transmitted drug resistance mutations in southern Brazil5 February 2019 | AIDS Research and Therapy, Vol. 16, No. 1The effect of childhood trauma, ApoE genotype and HIV-1 viral protein R variants on change in cognitive performance27 December 2019 | BMC Research Notes, Vol. 12, No. 1Effect of diversity in gp41 membrane proximal external region of primary HIV-1 Indian subtype C sequences on interaction with broadly neutralizing antibodies 4E10 and 10E8Virus Research, Vol. 273HIV drug resistance in persons who inject drugs enrolled in an HIV prevention trial in Indonesia, Ukraine, and Vietnam: HPTN 07410 October 2019 | PLOS ONE, Vol. 14, No. 10Prevalence and Correlates of Pre-Treatment HIV Drug Resistance among HIV-Infected Children in Ethiopia19 September 2019 | Viruses, Vol. 11, No. 9Genotypic Characterization of Human Immunodeficiency Virus Type 1 Isolated from Antiretroviral Treatment-Experienced Individuals in Buleleng Regency, Bali, Indonesia Ni Luh Ayu Megasari, Devi Oktafiani, Elsa Fitri Ana, Shuhei Ueda, Tomohiro Kotaki, Nasronudin, Soetjipto, and Masanori Kameoka1 August 2019 | AIDS Research and Human Retroviruses, Vol. 35, No. 8Absence of Integrase Strand Transfer Inhibitor Associated Resistance in Antiretroviral Therapy Naïve and Experienced Individuals from Western India Santosh Karade, Sourav Sen, and Vangal Krishnaswamy Sashindran4 June 2019 | AIDS Research and Human Retroviruses, Vol. 35, No. 6Unusual Cysteine Content in V1 Region of gp120 From an Elite Suppressor That Produces Broadly Neutralizing Antibodies15 May 2019 | Frontiers in Immunology, Vol. 10HIV Subtype and Nef-Mediated Immune Evasion Function Correlate with Viral Reservoir Size in Early-Treated Individuals5 March 2019 | Journal of Virology, Vol. 93, No. 6Association between HIV-1 subtype and drug resistance in Nigerian infants27 September 2018 | Journal of Antimicrobial Chemotherapy, Vol. 74, No. 1Evidence for a recombinant origin of HIV-1 Group M from genomic variation22 January 2019 | Virus Evolution, Vol. 5, No. 1Tracking HIV-1 recombination to resolve its contribution to HIV-1 evolution in natural infection15 May 2018 | Nature Communications, Vol. 9, No. 1Novel HLA class I associations with HIV-1 control in a unique genetically admixed population17 April 2018 | Scientific Reports, Vol. 8, No. 1Antiretroviral resistance, genotypic characterization and origin of Human Immunodeficiency Virus among the infected wives of Intravenous drug users in Manipur12 October 2018 | Scientific Reports, Vol. 8, No. 1Extensive host immune adaptation in a concentrated North American HIV epidemicAIDS, Vol. 32, No. 14Prevalence of Drug Resistance Mutations in Protease, Reverse Transcriptase, and Integrase Genes of North Central Mexico HIV Isolates Pedro Gerardo Hernandez-Sanchez, Sandra Elizabeth Guerra-Palomares, Jose Luis Ramirez-GarciaLuna, Jesus Rafael Arguello, Daniel Ernesto Noyola, and Christian Alberto Garcia-Sepulveda1 June 2018 | AIDS Research and Human Retroviruses, Vol. 34, No. 6High Levels of Dual-Class Drug Resistance in HIV-Infected Children Failing First-Line Antiretroviral Therapy in Southern Ethiopia1 February 2018 | Viruses, Vol. 10, No. 2Weaker HLA Footprints on HIV in the Unique and Highly Genetically Admixed Host Population of MexicoJournal of Virology, Vol. 92, No. 2Deep sequencing of near full-length HIV-1 genomes from plasma identifies circulating subtype C and infrequent occurrence of AC recombinant form in Southern India8 December 2017 | PLOS ONE, Vol. 12, No. 12Maedi-visna virus persistence: Antigenic variation and latencyComparative Immunology, Microbiology and Infectious Diseases, Vol. 55Tracing the epidemic history of HIV-1 CRF01_AE clusters using near-complete genome sequences22 June 2017 | Scientific Reports, Vol. 7, No. 1Recent increased identification and transmission of HIV-1 unique recombinant forms in Sweden25 July 2017 | Scientific Reports, Vol. 7, No. 1Monophylogenetic HIV-1C epidemic in Ethiopia is dominated by CCR5-tropic viruses–an analysis of a prospective country-wide cohort6 January 2017 | BMC Infectious Diseases, Vol. 17, No. 1Multiple HIV-1/M + HIV-1/O dual infections and new HIV-1/MO inter-group recombinant forms detected in Cameroon13 January 2017 | Retrovirology, Vol. 14, No. 1Impaired human immunodeficiency virus type 1 replicative fitness in atypical viremic non-progressor individuals20 March 2017 | AIDS Research and Therapy, Vol. 14, No. 1Absence of neurocognitive disadvantage associated with paediatric HIV subtype A infection in children on antiretroviral therapy20 October 2017 | Journal of the International AIDS Society, Vol. 20, No. 2Probing the compartmentalization of HIV-1 in the central nervous system through its neutralization properties25 August 2017 | PLOS ONE, Vol. 12, No. 8Comparison of genetic characteristics in the evolution of Norovirus GII.4 and GII.1714 March 2017 | Journal of Medical Virology, Vol. 89, No. 8An in vitro Model to Mimic Selection of Replication-Competent HIV-1 Intersubtype Recombination in Dual or Superinfected PatientsJournal of Molecular Biology, Vol. 429, No. 14Molecular epidemiology of HIV-1 among the HIV infected people of Manipur, Northeastern India: Emergence of unique recombinant forms23 December 2016 | Journal of Medical Virology, Vol. 89, No. 6Low Rates of Transmitted Drug Resistance Among Newly Identified HIV-1 Seroconverters in Rural Rakai, Uganda Steven J. Reynolds, Victor Ssempijja, Ronald Galiwango, Anthony Ndyanabo, Gertrude Nakigozi, Fred Lyagoba, Jamirah Nazziwa, Andrew Redd, Susanna L. Lamers, Ron Gray, Maria Wawer, David Serwadda, and Thomas C. Quinn1 May 2017 | AIDS Research and Human Retroviruses, Vol. 33, No. 5Short Communication: Phylogenetic Evidence of HIV-1 Transmission Between Adult and Adolescent Men Who Have Sex with Men Elizabeth Wolf, Joshua T. Herbeck, Stephen Van Rompaey, Mari Kitahata, Katherine Thomas, Gregory Pepper, and Lisa Frenkel1 April 2017 | AIDS Research and Human Retroviruses, Vol. 33, No. 4Genomic analysis of the evolutionary lineage of Norovirus GII.4 from archival specimens during 1975-1987 in Tokyo13 July 2016 | Journal of Medical Virology, Vol. 89, No. 2Infection of rhesus macaques with a pool of simian immunodeficiency virus with the envelope genes from acute HIV-1 infections25 November 2016 | AIDS Research and Therapy, Vol. 13, No. 1Transmitted HIV Drug Resistance Is High and Longstanding in Metropolitan Washington, DC15 June 2016 | Clinical Infectious Diseases, Vol. 63, No. 6Comprehensive Characterization of HIV-1 Molecular Epidemiology and Demographic History in the Brazilian Region Most Heavily Affected by AIDSJournal of Virology, Vol. 90, No. 18The dynamics of the HIV epidemic among men who have sex with men (MSM) from 2005 to 2012 in Shenzhen, China29 June 2016 | Scientific Reports, Vol. 6, No. 1Features of Recently Transmitted HIV-1 Clade C Viruses that Impact Antibody Recognition: Implications for Active and Passive Immunization19 July 2016 | PLOS Pathogens, Vol. 12, No. 7Phylogeographic analysis of the 2000–2002 foot-and-mouth disease epidemic in ArgentinaInfection, Genetics and Evolution, Vol. 41The Evolving Profile of the Signature Amino Acid Residues in HIV-1 Subtype C Tat Shambhu Prasad G. Aralaguppe, Shilpee Sharma, Malini Menon, Vinayaka R. Prasad, Shanmugam Saravanan, Kailapuri G. Murugavel, Suniti Solomon, and Udaykumar Ranga21 April 2016 | AIDS Research and Human Retroviruses, Vol. 32, No. 5HIV migration between blood plasma and cellular subsets before and after HIV therapy21 September 2015 | Journal of Medical Virology, Vol. 88, No. 4Contribution of Epidemiological Predictors in Unraveling the Phylogeographic History of HIV-1 Subtype C in BrazilJournal of Virology, Vol. 89, No. 24Recombination elevates the effective evolutionary rate and facilitates the establishment of HIV-1 infection in infants after mother-to-child transmission16 November 2015 | Retrovirology, Vol. 12, No. 1Analysis of Immunological, Viral, Genetic, and Environmental Factors That Might Be Associated with Decreased Susceptibility to HIV Infection in Serodiscordant Couples in Florianópolis, Southern Brazil Íris M. Santos, Elis A. da Rosa, Tiago Gräf, Luiz G. E. Ferreira, Andrea Petry, Fernanda Cavalheiro, Edna M. Reiche, Carlos R. Zanetti, and Aguinaldo R. Pinto6 November 2015 | AIDS Research and Human Retroviruses, Vol. 31, No. 11HIV Drug Resistance Testing by High-Multiplex “Wide” Sequencing on the MiSeq InstrumentAntimicrobial Agents and Chemotherapy, Vol. 59, No. 11Genetic diversity of HIV-1 and transmitted drug resistance among newly diagnosed individuals with HIV infection in Hangzhou, China20 April 2015 | Journal of Medical Virology, Vol. 87, No. 10The sexually driven epidemic in youths in China’s southwestern border region was caused by dynamic emerging multiple recombinant HIV-1 strains2 July 2015 | Scientific Reports, Vol. 5, No. 1Characterization of Novel HIV-1 Intersubtype CRF01_AE/C and A1/C Recombinants from IndiaGenome Announcements, Vol. 3, No. 4HIV-1 epidemiology and circulating subtypes in the countryside of South BrazilRevista da Sociedade Brasileira de Medicina Tropical, Vol. 48, No. 3Viral Envelope Is a Major Determinant of Enhanced Fitness of a Multidrug-Resistant HIV-1 VariantJAIDS Journal of Acquired Immune Deficiency Syndromes, Vol. 68, No. 5Construction and Evaluation of Novel Rhesus Monkey Adenovirus Vaccine VectorsJournal of Virology, Vol. 89, No. 3Phylogenetic and geospatial evaluation of HIV-1 subtype diversity at the largest HIV center in Rhode IslandInfection, Genetics and Evolution, Vol. 28Reliable reconstruction of HIV-1 whole genome haplotypes reveals clonal interference and genetic hitchhiking among immune escape variants4 July 2014 | Retrovirology, Vol. 11, No. 1A uniquely prevalent nonnucleoside reverse transcriptase inhibitor resistance mutation in Russian subtype A HIV-1 virusesAIDS, Vol. 28, No. 17Impact of Clade, Geography, and Age of the Epidemic on HIV-1 Neutralization by AntibodiesJournal of Virology, Vol. 88, No. 21Cross-Border Sexual Transmission of the Newly Emerging HIV-1 Clade CRF51_01B23 October 2014 | PLoS ONE, Vol. 9, No. 10Genotypes and Transmitted Drug Resistance among Treatment-Naive HIV-1-Infected Patients in a Northwestern Province, China: Trends from 2003 to 201315 October 2014 | PLoS ONE, Vol. 9, No. 10Near Full-Length Genome Sequence of a Novel HIV-1 Recombinant Form (CRF01_AE/B) Detected Among Men Who Have Sex with Men in Jilin Province, China Xingguang Li, Yi Feng, Yao Yang, Yanli Chen, Qi Guo, Liuyan Sun, Xihui Zang, Hui Xing, and Yiming Shao1 July 2014 | AIDS Research and Human Retroviruses, Vol. 30, No. 7Complete Genome Sequence of the WHO International Standard for HIV-1 RNA Determined by Deep SequencingGenome Announcements, Vol. 2, No. 1HIV Type 1 Subtypes Based on the pol Gene and Drug Resistance Mutations Among Antiretroviral-Naive Patients from Guangxi, Southern China Qijian Su, Hao Liang, Ping Cen, Zhiyou Bi, and Ping Zhou25 June 2012 | AIDS Research and Human Retroviruses, Vol. 28, No. 7Phylodynamics of HIV-1 from a Phase III AIDS Vaccine Trial in Bangkok, Thailand10 March 2011 | PLoS ONE, Vol. 6, No. 3Identification and Genetic Characterization of a Novel CRF22_01A1 Recombinant Form of HIV Type 1 in Cameroon Jiangqin Zhao, Shixing Tang, Viswanath Ragupathy, Jean K. Carr, Nathan D. Wolfe, Bih Awazi, and Indira Hewlett3 September 2010 | AIDS Research and Human Retroviruses, Vol. 26, No. 9Genetic Recombination and Bacterial Population Structure9 April 2010Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning27 April 2009 | BMC Bioinformatics, Vol. 10, No. 1Cardioviruses Are Genetically Diverse and Cause Common Enteric Infections in South Asian ChildrenJournal of Virology, Vol. 83, No. 9Molecular characterization of hepatitis B virus genotype A from Argentina and Brazil19 February 2009 | Archives of Virology, Vol. 154, No. 3Phylogenetic Detection of Recombination with a Bayesian Prior on the Distance between Trees9 July 2008 | PLoS ONE, Vol. 3, No. 7HIV-1 Recombination: An Experimental Assay and a Phylogenetic ApproachCoreceptor Tropism in Human Immunodeficiency Virus Type 1 Subtype D: High Prevalence of CXCR4 Tropism and Heterogeneous Composition of Viral PopulationsJournal of Virology, Vol. 81, No. 15Genetic diversity of porcine sapovirusesVeterinary Microbiology, Vol. 122, No. 3-4An Exact Nonparametric Method for Inferring Mosaic Structure in Sequence Triplets1 June 2007 | Genetics, Vol. 176, No. 2Phylogenetic Analysis of Feline Immunodeficiency Virus in Feral and Companion Domestic Cats of New ZealandJournal of Virology, Vol. 81, No. 6A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes22 May 2006 | BMC Bioinformatics, Vol. 7, No. 1Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomesJournal of Virological Methods, Vol. 136, No. 1-2Risk of HIV-1 transmission by breastfeeding among mothers infected with recombinant and non-recombinant HIV-1 genotypesVirus Research, Vol. 120, No. 1-2Genetic Characterization of Diverse HIV-1 Strains in an Immigrant Population Living in New York CityJAIDS Journal of Acquired Immune Deficiency Syndromes, Vol. 41, No. 4Different Rates of Disease Progression of HIV Type 1 Infection in Tanzania Based on Infecting SubtypeClinical Infectious Diseases, Vol. 42, No. 6Trends in Antiretroviral Drug Resistance and Clade Distributions Among HIV-1--Infected Blood Donors in Sao Paulo, BrazilJAIDS Journal of Acquired Immune Deficiency Syndromes, Vol. 41, No. 3Genetic Diversity and Recombination of Porcine SapovirusesJournal of Clinical Microbiology, Vol. 43, No. 12Porcine Noroviruses Related to Human Noroviruses1 December 2005 | Emerging Infectious Diseases, Vol. 11, No. 12Limited Evolution in the HIV Type 1 pol Region among Acute Seroconverters in Pune, India Susan H. Eshleman, Sarah E. Hudelson, Amita Gupta, Robert Bollinger, Anand D. Divekar, Raman R. Gangakhedkar, Smita S. Kulkarni, Madhuri R. Thakar, Ramesh S. Paranjape, and Srikanth Tripathy21 January 2005 | AIDS Research and Human Retroviruses, Vol. 21, No. 1A Modified Bootscan Algorithm for Automated Identification of Recombinant Sequences and Recombination Breakpoints D.P. Martin, D. Posada, K.A. Crandall, and C. Williamson21 January 2005 | AIDS Research and Human Retroviruses, Vol. 21, No. 1Genetic Recombination between Two Genotypes of Genogroup III Bovine Noroviruses (BoNVs) and Capsid Sequence Diversity among BoNVs and Nebraska-Like Bovine Enteric CalicivirusesJournal of Clinical Microbiology, Vol. 42, No. 11Feline immunodeficiency virus subtypes A, B and C and intersubtype recombinants in Ontario, CanadaJournal of General Virology, Vol. 85, No. 7Performance of the Celera Diagnostics ViroSeq HIV-1 Genotyping System for Sequence-Based Analysis of Diverse Human Immunodeficiency Virus Type 1 StrainsJournal of Clinical Microbiology, Vol. 42, No. 6Characterization of Nevirapine Resistance Mutations in Women With Subtype A Vs. D HIV-1 6???8 Weeks After Single-Dose Nevirapine (HIVNET 012)JAIDS Journal of Acquired Immune Deficiency Syndromes, Vol. 35, No. 2Hypermutation of HIV Type 1 Genomes Isolated from Infants Soon after Vertical Infection Irene N. Koulinska, Beth Chaplin, Davis Mwakagile, Max Essex, and Boris Renjifo5 July 2004 | AIDS Research and Human Retroviruses, Vol. 19, No. 12Characterization of a Novel Simian Immunodeficiency Virus (SIVmonNG1) Genome Sequence from a Mona Monkey ( Cercopithecus mona )Journal of Virology, Vol. 77, No. 12Evidence of recombination in natural populations of hepatitis A virusVirology, Vol. 311, No. 1Sequence Characterization of the Protease and Partial Reverse Transcriptase Proteins of the NED Panel, an International HIV Type 1 Subtype Reference and Standards Panel Diana D. Huang, Thomas A. Giesler, and James W. Bremer5 July 2004 | AIDS Research and Human Retroviruses, Vol. 19, No. 4Molecular Characteristics of Human Immunodeficiency Virus Type 1 Subtype C Viruses from KwaZulu-Natal, South Africa: Implications for Vaccine and Antiretroviral Control StrategiesJournal of Virology, Vol. 77, No. 4HIV Type 1 Subtypes among Bar and Hotel Workers in Moshi, Tanzania Ireen E. Kiwelu, Boris Renjifo, Beth Chaplin, Noel Sam, Watoky M.M.M. Nkya, John Shao, Saidi Kapiga, and Max Essex5 July 2004 | AIDS Research and Human Retroviruses, Vol. 19, No. 1Recombination in Evolutionary GenomicsAnnual Review of Genetics, Vol. 36, No. 1Novel Evolutionary Analyses of Full-Length HIV Type 1 Subtype C Molecular Clones from Cape Town, South Africa Jan zur Megede, Susan Engelbrecht, Tulio de Oliveira, Sharon Cassol, Thomas J. Scriba, Estrelita Janse van Rensburg, and Susan W. Barnett5 July 2004 | AIDS Research and Human Retroviruses, Vol. 18, No. 17In Vitro Intersubtype Recombinants of Human Immunodeficiency Virus Type 1: Comparison to Recent and Circulating In Vivo Recombinant FormsJournal of Virology, Vol. 76, No. 19Common Genetic Arrangements among Human Immunodeficiency Virus Type 1 Subtype A and D Recombinant Genomes Vertically Transmitted in Tanzania Irene N. Koulinska, Gernard Msamanga, Davis Mwakagile, Max Essex, and Boris Renjifo5 July 2004 | AIDS Research and Human Retroviruses, Vol. 18, No. 13Identification of Two CRF11-cpx Genomes and Two Preliminary Representatives of a New Circulating Recombinant Form (CRF13-cpx) of HIV Type 1 in Cameroon Karin Wilbe, Charlotte Casper, Jan Albert, and Thomas Leitner5 July 2004 | AIDS Research and Human Retroviruses, Vol. 18, No. 12Identification of Ugandan HIV Type 1 Variants with Unique Patterns of Recombination in pol Involving Subtypes A and D Susan H. Eshleman, Matthew J. Gonzales, Graziella Becker-Pergola, Shawn C. Cunningham, Laura A. Guay, J. Brooks Jackson, and Robert W. Shafer5 July 2004 | AIDS Research and Human Retroviruses, Vol. 18, No. 7HIV-1 SubtypingGraphical Methods for Exploring Sequence RelationshipsPhylogenetics of HIVGoals and Strategies for Analysis of Recombination among HIV Molecular SequencesThe HIV Databases: History, Design and FunctionGenetic recombination and its role in the development of the HIV-1 pandemicAIDS, Vol. 16Recombination in the ompA Gene but Not the omcB Gene of Chlamydia Contributes to Serovar-Specific Differences in Tissue Tropism, Immune Surveillance, and Persistence of the OrganismJournal of Bacteriology, Vol. 183, No. 20A New Human Immunodeficiency Virus Type 1 Circulating Recombinant Form from Tanzania Irene N. Koulinska, Thumbi Ndung'u, Davis Mwakagile, Gernard Msamanga, Charles Kagoma, Wafaie Fawzi, Max Essex, and Boris Renjifo5 July 2004 | AIDS Research and Human Retroviruses, Vol. 17, No. 5Recombinant Strains of HIV Type 1 in the United Kingdom K.L. Barlow, I.D. Tatt, P.A. Cane, D. Pillay, and J.P. Clewley5 July 2004 | AIDS Research and Human Retroviruses, Vol. 17, No. 5The Molecular Epidemiology of HIV Type 1 of Men in Mexico Lydia G. Rivera-Morales, Vladimir A. Novitsky, J. Roberto Trujillo, Carlos Lavalle-Montalvo, Carlos Cano-Dominguez, Javier Ramos-Jimenez, Eusebio Jimenez-Rios, Leopoldo Flores-Flores, Paulo Lopez-Guillen, Peter Gilbert, Fredrik Vannberg, Reyes Tamez-Guerra, Cristina Rodriguez-Padilla, and Max Essex5 July 2004 | AIDS Research and Human Retroviruses, Vol. 17, No. 1Molecular Cloning and Biological Characterization of Full-Length HIV-1 Subtype C from BotswanaVirology, Vol. 278, No. 2Emergence of New Forms of Human Immunodeficiency Virus Type 1 Intersubtype Recombinants in Central Myanmar Kazushi Motomura, Shigeru Kusagawa, Kayoko Kato, Kyoko Nohtomi, Hla Htut Lwin, Khin Maung Tun, Min Thwe, Khin Yi Oo, Soe Lwin, Ohn Kyaw, Myint Zaw, Yoshiyuki Nagai, and Yutaka Takebe5 July 2004 | AIDS Research and Human Retroviruses, Vol. 16, No. 17Testing the Hypothesis of a Recombinant Origin of Human Immunodeficiency Virus Type 1 Subtype EJournal of Virology, Vol. 74, No. 22Diversity of the HIV-1 Long Terminal Repeat Following Mother-to-Child TransmissionVirology, Vol. 274, No. 2Multiple-Changepoint Testing for an Alternating Segments Model of a Binary Sequence24 May 2004 | Biometrics, Vol. 56, No. 3Genetic Subtypes of HIV Type 1 in Republic of Congo Blaise Bikandou, Jun Takehisa, Innocent Mboudjeka, Eiji Ido, Takeo Kuwata, Yasuyuki Miyazaki, Hiroyuki Moriyama, Yosuke Harada, Yuko Taniguchi, Hiroshi Ichimura, Mikio Ikeda, Patrice Juste Ndolo, Marie-Yvonne Nzoukoudi, Reine M'Vouenze, Michel M'Pandi, Henri Jopseph Parra, Pierre M'pelé, and Masanori Hayami5 July 2004 | AIDS Research and Human Retroviruses, Vol. 16, No. 7Widespread circulation of a B/F intersubtype recombinant form among HIV-1-infected individuals in Buenos Aires, ArgentinaAIDS, Vol. 14, No. 7Interaction with Human Immunodeficiency Virus (HIV) Type 2 Predicts HIV Type 1 GenotypeVirology, Vol. 268, No. 2Significance of HIV-1 Genetic Subtypes8 July 2009 | Scandinavian Journal of Infectious Diseases, Vol. 32, No. 5Presence of Multiple HIV Subtypes and a High Frequency of Subtype Chimeric Viruses in Heterosexually Infected WomenJournal of Acquired Immune Deficiency Syndromes, Vol. 22, No. 4Presence of Multiple HIV Subtypes and a High Frequency of Subtype Chimeric Viruses in Heterosexually Infected WomenJAIDS Journal of Acquired Immune Deficiency Syndromes, Vol. 22, No. 4Minimally Selected P and Other Tests for A Single Abrupt Changepoint in A Binary Sequence25 May 2004 | Biometrics, Vol. 55, No. 4Emerging recombinant human immunodeficiency viruses: uneven representation of the envelope V3 regionAIDS, Vol. 13, No. 13Characterization of a Highly Replicative Intergroup M/O Human Immunodeficiency Virus Type 1 Recombinant Isolated from a Cameroonian PatientJournal of Virology, Vol. 73, No. 9High Diversity of HIV-1 Subtype F Strains in Central AfricaVirology, Vol. 259, No. 1Molecular Cloning and Phylogenetic Analysis of Human Immunodeficiency Virus Type 1 Subtype C: a Set of 23 Full-Length Clones from BotswanaJournal of Virology, Vol. 73, No. 5Genetic Characterization of the nef Gene from Human Immunodeficiency Virus Type 1 Group M Strains Representing Genetic Subtypes A, B, C, E, F, G, and H Veronique Jubier-Maurin, Sentob Saragosti, Jean-Luc Perret, Eitel Mpoudi, Eka Esu-Williams, Claire Mulanga, Florian Liegeois, Michel Ekwalanga, Eric Delaporte, and Martine Peeters5 July 2004 | AIDS Research and Human Retroviruses, Vol. 15, No. 1Identification of Human Immunodeficiency Virus Type 1 Subtypes B and F, B/F Recombinant and Dual Infection with these Subtypes in Argentina8 July 2009 | Scandinavian Journal of Infectious Diseases, Vol. 31, No. 3An Isolate of Human Immunodeficiency Virus Type 1 Originally Classified as Subtype I Represents a Complex Mosaic Comprising Three Different Group M Subtypes (A, G, and I)Journal of Virology, Vol. 72, No. 12Use of Coreceptors Other Than CCR5 by Non-Syncytium-Inducing Adult and Pediatric Isolates of Human Immunodeficiency Virus Type 1 Is Rare In VitroJournal of Virology, Vol. 72, No. 11Molecular Epidemiology of an HIV-1 Subtype A Subcluster among Injection Drug Users in the Southern Ukraine VLADIMIR A. NOVITSKY, MONTY A. MONTANO, and MAX ESSEX15 March 2009 | AIDS Research and Human Retroviruses, Vol. 14, No. 12Sequence Note: Human Immunodeficiency Virus Type 1 Subtypes B and C Detected in New Zealand DOMINIC E. DWYER, BELINDA L. HERRING, YING CHUN GE, WAYNE V. BOLTON, ROD B. ELLIS-PEGLER, MARK THOMAS, BRYAN A. SCHROEDER, MARGARET C. CROXSON, ANTHONY L. CUNNINGHAM, JAMES I. MULLINS, and NITIN K. SAKSENA15 March 2009 | AIDS Research and Human Retroviruses, Vol. 14, No. 12HIV Type 1 Diversity and the Reliability of the Heteroduplex Mobility Assay IBTISSAM LOUSSERT-AJAKA, ELISABETH MENU, CRISTIAN APETREI, MARTINE PEETERS, FLORENCE DAMOND, PHILIPPE MAUCLÈRE, JOSEF EBERLE, CÉCILE BRENGUES, SENTOB SARAGOSTI, FRANÇOISE BARRÉ-SINOUSSI, FRANÇOISE BRUN-VÉZINET, and FRANÇOIS SIMON15 March 2009 | AIDS Research and Human Retroviruses, Vol. 14, No. 10Molecular Evidence for Nosocomial Transmission of Human Immunodeficiency Virus from a Surgeon to One of His PatientsJournal of Virology, Vol. 72, No. 5Sequence Note: Full-Length Sequence of Human Immunodeficiency Virus Type 1 Subtype A, Recombined with Subtype C in the env V3 Domain KIMDAR SHEREFA, BO JOHANSSON, MIKA SALMINEN, and ANDERS SÖNNERBORG15 March 2009 | AIDS Research and Human Retroviruses, Vol. 14, No. 3An African HIV-1 sequence from 1959 and implications for the origin of the epidemicNature, Vol. 391, No. 6667gag and env Sequences of an A/G/H Recombinant from a Zairian HIV Type 1 Isolate SANDRINE DUCHET, FRANCK LETOURNEUR, IBTISSAM LOUSSERT-AJAKA, CHANTAL CHAPLAIN, EMMANUEL GOMAS, FRANÇOISE BRUN-VEZINET, FRANÇOIS SIMON, and SENTOB SARAGOSTI15 March 2009 | AIDS Research and Human Retroviruses, Vol. 13, No. 15HIV/SIV glycoproteins: structure-function relationshipsJournal of Molecular Biology, Vol. 273, No. 1RNA VIRUS MUTATIONS AND FITNESS FOR SURVIVALAnnual Review of Microbiology, Vol. 51, No. 1Molecular Epidemiology of HIV in IsraelJournal of Acquired Immune Deficiency Syndromes and Human Retrovirology, Vol. 15, No. 4Sequence Note: Coexistence of Subtypes B, F, and a B/F env Recombinant of HIV Type 1 in Buenos Aires, Argentina SILVIA MARQUINA, THOMAS LEITNER, ROBERTO D. RABINOVICH, JORGE BENETUCCI, OSVALDO LIBONATTI, and JAN ALBERT15 March 2009 | AIDS Research and Human Retroviruses, Vol. 12, No. 17Maintaining the integrity of human immunodeficiency virus sequence databasesJournal of Virology, Vol. 70, No. 8Monitoring HIV-1 Subtype Distribution Volume 11Issue 11Nov 1995 To cite this article:ADAM C. SIEPEL, AARON L. HALPERN, CATHERINE MACKEN, and BETTE T.M. KORBER.A Computer Program Designed to Screen Rapidly for HIV Type 1 Intersubtype Recombinant Sequences.AIDS Research and Human Retroviruses.Nov 1995.1413-1416.http://doi.org/10.1089/aid.1995.11.1413Published in Volume: 11 Issue 11: March 16, 2009PDF download
Referência(s)