Portal de Periódicos da CAPES

Effects of solution polarity and viscosity on peptide deamidation

2000; Wiley; Volume: 56; Issue: 5 Linguagem: Inglês

10.1034/j.1399-3011.2000.00783.x

1399-3011

R. Li, Ajit Joseph M. D'Souza, Richard L. Schowen, R. T. BORCHARDT, Elizabeth M. Topp, Brian B. Laird,

DNA and Nucleic Acid Chemistry

Abstract: Deamidation kinetics were measured for a model hexapeptide ( l ‐Val‐ l ‐Tyr‐ l ‐Pro‐ l ‐Asn‐Gly‐ l ‐Ala, 0.02 mg/mL) in aqueous solutions containing glycerol (0–50% w/w) and poly(vinyl pyrrolidone) (PVP, 0–20% w/w) at 37 °C and pH 10 to determine the effects of solution polarity and viscosity on reactivity. The observed pseudo‐first order deamidation rate constants, k obs , decreased markedly when the viscosity increased from 0.7 to 13 cp, but showed no significant change at viscosities > 13 cp. Values of k obs also increased with increasing dielectric constant and decreasing refractive index. Molecular dynamics simulations indicated that the free energy associated with Asn side‐chain motion is insensitive to changes in dielectric constant, suggesting that the observed dielectric constant dependence is instead related primarily to the height of the transition state energy barrier. An empirical model was proposed to describe the effects of the viscosity, refractive index and dielectric constant on k obs . Analysis of the regression coefficients suggested that both permanent and induced dipoles of the medium affect the deamidation rate constant, but that solution viscosity is relatively unimportant in the range studied.