Artigo Revisado por pares

Phylogenetic position, systematic status, and divergence time of the Procarididea (Crustacea: Decapoda)

2009; Wiley; Volume: 39; Issue: 2 Linguagem: Inglês

10.1111/j.1463-6409.2009.00410.x

ISSN

1463-6409

Autores

Heather D. Bracken‐Grissom, Sammy De Grave, Alicia Toon, Darryl L. Felder, Keith A. Crandall,

Tópico(s)

Parasite Biology and Host Interactions

Resumo

Zoologica ScriptaVolume 39, Issue 2 p. 198-212 Phylogenetic position, systematic status, and divergence time of the Procarididea (Crustacea: Decapoda) Heather D. Bracken, Heather D. BrackenSearch for more papers by this authorSammy De Grave, Sammy De GraveSearch for more papers by this authorAlicia Toon, Alicia ToonSearch for more papers by this authorDarryl L. Felder, Darryl L. FelderSearch for more papers by this authorKeith A. Crandall, Keith A. CrandallSearch for more papers by this author Heather D. Bracken, Heather D. BrackenSearch for more papers by this authorSammy De Grave, Sammy De GraveSearch for more papers by this authorAlicia Toon, Alicia ToonSearch for more papers by this authorDarryl L. Felder, Darryl L. FelderSearch for more papers by this authorKeith A. Crandall, Keith A. CrandallSearch for more papers by this author First published: 12 February 2010 https://doi.org/10.1111/j.1463-6409.2009.00410.xCitations: 44 Heather D. Bracken, Department of Biology, Brigham Young University, 401 WIDB, Provo, UT 84602, USA. E-mail: [email protected] Sammy De Grave, Oxford University Museum of Natural History, Parks Road, Oxford OX1 3PW, UK. E-mail: [email protected] Alicia Toon, Department of Biology, Brigham Young University, Provo, UT 84602, USA. E-mail: [email protected] Darryl L. Felder, Department of Biology, University of Louisiana – Lafayette, Lafayette, Louisiana, 70504, USA. E-mail: [email protected] Keith A. Crandall, Department of Biology, Monte L. Bean Life Science Museum, Brigham Young University, Provo, UT 84602, USA. E-mail: [email protected] Read the full textAboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Share a linkShare onEmailFacebookTwitterLinkedInRedditWechat Abstract Bracken, H. D., De Grave, S., Toon, A., Felder, D. L. & Crandall, K. A. (2009). Phylogenetic position, systematic status, and divergence time of the Procarididea (Crustacea: Decapoda). —Zoologica Scripta, 39, 198–212. Ever since discovery of the anchialine shrimp, Procaris ascensionisChace & Manning 1972, there has been debate as to its systematic position in relationship to other shrimp-like decapods. Several morphological characters have suggested a close affinity among Procarididae, Dendrobranchiata and Stenopodidea, whereas other physical features unite Procarididae with Caridea. Few molecular studies have examined the phylogenetic position of procaridid shrimp due to limited available material for genetic analyses. Those studies show procaridids as sister to carideans but lack sufficient taxon and locus sampling to validate the relationship. Here, we present a molecular phylogeny of selected individuals across decapod infraorders and superfamilies to clarify the phylogenetic position of procaridid shrimp. One mitochondrial (16S) and three nuclear genes (18S, 28S, H3) have been chosen to elucidate relationships. We used Bayesian molecular dating methods implemented in multidivtime to estimate and compare the divergence times among procaridids and other lineages. Findings secure the placement of the procaridids as a sister clade to carideans. Results provide evidence for the recognition of procaridids as a separate infraorder (Procarididea Felgenhauer & Abele 1983) within the Decapoda on the basis of molecular and morphological data. References Abele, L. G. (1991). Comparison of morphological and molecular phylogeny of the Decapoda. Memoirs of the Queensland Museum, 31, 101–108. Abele, L. G. & Felgenhauer, B. E. (1986). Phylogenetic and phenetic relationships among the lower Decapoda. Journal of Crustacean Biology, 6, 385–400. Ahyong, S. & O' Meally, D. (2004). Phylogeny of the Decapoda Reptantia: resolution using three molecular loci and morphology. The Raffles Bulletin of Zoology, 52, 673–693. Amati, L., Feldmann, R. M. & Zonneveld, J. P. (2004). A new family of Triassic lobsters (Decapoda: Astacidea) from British Columbia and its phylogenetic context. Journal of Paleontology, 78, 150–168. Apakupakul, K., Siddall, M. E. & Burreson, E. M. (1999). Higher level relationships of leeches (Annelida: Clitellata: Euhirudinea) based on morphology and gene sequences. Molecular Phylogenetics and Evolution, 12, 350–359. Balss, H. (1957). Decapoda. VIII. Systematik. Klassen und Ordnungen des Tierreichs, 5(1), 7(12), 1505–1672, textfigs.1131–1199. Bauer, R. (1979). Antifouling adaptations of marine shrimp (Decapoda: Caridea): gill cleaning mechanisms and grooming of brooded embryos. Zoological Journal of the Linnean Society, 65(4), 281–303. Bauer, R. (1984). Morphological trends in the genus Heptacarpus (Decapoda, Caridea) and their phylogenetic significance. Journal of Crustacean Biology, 4(2), 201–225. Bauer, R. (2004). Remarkable Shrimps: Adaptations and Natural History of the Carideans. Norman: University of Okalahoma Press. Bracken, H., Toon, A., Felder, D. L., Martin, J. W., Finley, M., Rasmussen, J., Palero, F. & Crandall, K. A. (2009a). The decapod tree of life: compiling the data and moving toward a consensus of decapod evolution. Arthropod Systematics and Phylogenetics, 67(1), 99–116. Bracken, H. D., De Grave, S. & Felder, D. L. (2009b). Phylogeny of the infraorder Caridea based on nuclear and mitochondrial genes (Crustacea: Decapoda). In J. W. Martin, K. A. Crandall & D. L. Felder (Eds) Decapod Crustacean Phylogenetics (Crustacean Issues 18) (pp. 281–305). Bocan Raton: CRC Press. Breinholt, J., Perez-Losada, M. & Crandall, K. A. (2009). The timing of the diversification of the freshwater crayfishes. In J. W. Martin, K. A. Crandall & D. L. Felder (Eds) Decapod Crustacean Phylogenetics (Crustacean Issues) (pp. 343–355). Bocan Raton: CRC Press. Bruce, A. J. & Davie, P. F. J. (2006). A new anchialine shrimp of the genus Procaris from christmas island: the first occurrence of the Procarididae in the Indian Ocean (Crustacea: Decapoda: Caridea). Zootaxa, 1238, 23–33. Burkenroad, M. D. (1936). The Aristaeinae, Solenocerinae and pelagic Penaeiniae of the Bingham Oceanographic collection. Bulletin of the Bingham Oceanographic Collection, 5, 1–151. Burkenroad, M. D. (1963). The evolution of the Eucarida (Crustacea, Eumalacostraca), in relation to the fossil record. Tulane Studies in Geology, 2, 1–18. Burkenroad, M. D. (1981). The higher taxonomy and evolution of Decapoda (Crustacea). Transactions of the San Diego Society of Natural History, 19, 251–268. Burkenroad, M. D. (1983). Natural classification of the Dendrobranchiata, with a key to recent genera. In F. Schram (Ed) Crustacean Phylogeny (pp. 279–290). A.A. Balkema Rotterdam. Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution, 17, 540–552. Chace, F. A. (1992). On the classification of the Caridea (Decapoda). Crustaceana, 63, 70–80. Chace, F. A. Jr & Manning, R. B. (1972). Two new caridean shrimps, on representing a new family, from marine pools on Ascension Island (Crustacea: Decapoda: Natantia). Smithsonian Contributions to Zoology, 131, 1–18. Christoffersen, M. L. (1988). Phylogenetic systematics of the Eucarida (Crustacea, Malacostraca). Revista Brasiliera de Zoologia, 5, 325–351. Colgan, D. J., McLauchlan, A., Wilson, G. D. F., Livingston, S. P., Edgecombe, G. D., Macaranas, J., Cassis, G. & Gray, M.R. (1998). Histone 3 and U2 snRNA DNA sequences and arthropod molecular evolution. Australian Journal of Zoology, 46, 419–437. Crandall, K. A. & Buhay, J. E. (2008). Global diversity of crayfish (Astacidae, Cambaridae, and Parastacidae-Decapoda) in freshwater. Hydrobiologia, 595, 295–301. Crandall, K. A. & Fitzpatrick, J. F. (1996). Crayfish molecular systematics: using a combination of procedures to estimate phylogeny. Systematic Biology, 45, 1–26. Crandall, K., A Harris, J. D. & Fetzner, J. W. (2000). The monophyletic origin of freshwater crayfish estimated from nuclear and mitochondrial DNA sequences. Proceedings of the Royal Society of London B, 267, 1679–1686. Cummings, M. P., Handley, S. A., Myers, D. S., Reed, D. L., Rokas, A. & Winka, K. (2003). Comparing bootstrap and posterior probability values in the four-taxon case. Systematic Biology, 52, 477–487. Dall, W., Hall, B. J., Rothlisberg, P. & Staples, D. J. (1990). The biology of the Penaeidae. Advances in Marine Biology, 27, 1–489. Dixon, C. J., Ahyong, S. & Schram, F. R. (2003). A new hypothesis of decapod phylogeny. Crustaceana, 76, 935–975. Douady, C. J., Delsuc, F., Boucher, Y., Doolittle, W. F. & Douzery, E. J. P. (2003). Comparison of Bayesian and maximum likelihood bootstrap measures of phylogenetic reliability. Molecular Biology and Evolution, 20, 248–254. Edgar, R. C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32, 1792–1797. Felder, D. L. & Robles, R. (2009). Molecular phylogeny of the family Callianassidae based on preliminary analyses of two mitochondrial genes. In J. W. Martin, K. A. Crandall & D. L. Felder (Eds) Decapod Crustacean Phylogenetics (Crustacean Issues 18) (pp. 327–342). Bocan Raton, FL: CRC Press. Feldmann, R. M., Vega, F. J., Applegate, S. P. & Bishop, G. A. (1998). Early cretaceous arthropods from the Tlayua Formation at Tepexi de Rodriguez, Puebla, Mexico. Journal of Paleontology, 72, 79–90. Feldmann, R. M., Vega, F. J., Martinez-Lopez, L., Gonzalez-Rodriguez, K. A., Gonzalez-Leon, O. & Fernandez-Barajas, M. D. R. (2007). Crustacea from the Muhi Quarry (Albian-Cenomanian), and a review of Aptian Mecochiridae (Astacidea) from Mexico. Annals of Carnegie Museum, 76, 145–156. Felgenhauer, B. E. & Abele, L. G. (1983). Phylogenetic relationships among shrimp-like decapods. In F. R. Schram (Ed) Crustacean Phylogeny (pp. 291–311). Rotterdam: A. A. Balkema. Felgenhauer, B. E. & Abele, L. G. (1985). Feeding structures of 2 atyid shrimps, with comments on caridean phylogeny. Journal of Crustacean Biology, 5, 397–419. Felgenhauer, B. E. & Abele, L. G. (1989). Evolution of the foregut in the lower Decapoda. In B. E. Felgenhauer, L. Watling & A. B. Thistle (Eds) Functional Morphology of Feeding and Grooming in Crustacea (pp. 205–219). Rotterdam: A.A. Balkema. Felgenhauer, B. E., Abele, L. G. & Kim, W. (1988). Reproductive morphology of the anchialine shrimp Procaris ascensionis (Decapoda: Procarididae). Journal of Crustacean Biology, 8, 333–339. Felsenstein, J. (1984). Distance methods for inferring phylogenies: a justification. Evolution, 38, 16–24. Felsenstein, J. (1985). Confidence-limits on phylogenies with a molecular clock. Systematic Zoology, 34, 152–161. Fransen, C. H. J. M. & De Grave, S. (2009). Evolution and radiation of shrimp-like decapods: an overview. In J. W. Martin, K. A. Crandall & D. L. Felder (Eds) Decapod Crustacean Phylogenetics (Crustacean Issues 18) (pp. 245–259). Bocan Raton: CRC Press. Garassino, A. (2000). New decapod crustaceans from the Cenomanian (Upper Cretaceous) of Lebanon. Atti della Società italiana di scienze naturali e del museo civico di storia naturale di Milano, 141, 237–250. Garassino, A. & Bravi, S. (2003). Palaemon antonellae new species (Crustacea, Decapoda, Caridea) from the lower cretaceous 'Platydolomite' of Profeti (Caserta, Italy). Journal of Paleontology, 77, 589–592. Garassino, A. & Jakobsen, S. L. (2005). Morscrangon acutus n. gen. n. sp. (Crustacea: Decapoda: Caridea) from the fur formation (early eocene) of the Islands of Mors and Fur (Denmark). Atti della Società italiana di scienze naturali e del museo civico di storia naturale di Milano, 146, 95–107. Giribet, G., Carranza, S., Baguna, J., Riutort, M. & Ribera, C. (1996). First molecular evidence for the existence of a Tardigrada plus Arthropoda clade. Molecular Biology and Evolution, 13, 76–84. Glaessner, M. F. (1969). Decapoda Part R Arthropoda 4 (pp. R400–R651). Lawrence, Kansas: The Geological Society of America, Inc., and the University of Kansas Press. Hart, C. W. & Manning, R. B. (1986). 2 new shrimps (Procarididae and Agostocarididae, New Family) from marine caves of the Western North-Atlantic. Journal of Crustacean Biology, 6, 408–416. Holthuis, L. B. (1973). Caridean shrimps found in land-locked saltwater pools at four indo-west Pacific localities (Sinai Peninsula, Funafuti Atoll, Maui and Hawaii Islands), with the description of one new genus and four new species. Zoologische Verhandelingen, Leiden, 128, 1–48. Holthuis, L. B. (1993). The Recent Genera of the Caridean and Stenopodidean Shrimps (Crustacea, Decapoda): with an Appendix on the Order Amphionidacea. Leiden: Nationaal Natuurhistorisch Museum. Huelsenbeck, J. P. & Ronquist, F. (2001). MRBAYES: bayesian inference of phylogeny. Biometrics, 17, 754–755. Imaizumi, R. (1938). Fossil Crayfish from Jehol. Japan: Sendel. Katoh, K., Kuma, K., Toh, H. & Miyata, T. (2005). MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Research, 33, 511–518. Kensley, B. & Williams, D. (1986). New shrimps (families Procarididae and Atyidae) from a submerged lava tube on Hawaii. Journal of Crustacean Biology, 6, 417–437. Kim, W. & Abele, L. G. (1990). Molecular phylogeny of selected decapod crustaceans based on 18S ribosomal-RNA nucleotide sequences. Journal of Crustacean Biology, 10, 1–13. Kishino, H., Thorne, J. L. & Bruno, W. J. (2001). Performance of a divergence time estimation method under a probabilistic model of rate evolution. Molecular Biology and Evolution, 18, 352–361. Ma, K. Y., Chan, T.-Y. & Chu, K. H. (2009). Phylogeny of penaeoid shrimps (Decapoda: Penaeoidea) inferred from nuclear protein-coding genes. Molecular Phylogenetics and Evolution, 53, 45–55. Mantelatto, F. L. M., Robles, R., Biagi, R. & Felder, D. L. (2006). Molecular analysis of the taxonomic and distributional status for the hermit crab genera Loxopagurus Forest, 1964 and Isocheles Stimpson, 1858 (Decapoda, Anomura, Diogenidae). Zoosystema, 28, 495–506. Mantelatto, F. L., Robles, R. & Felder, D. L. (2007). Molecular phylogeny of the western Atlantic species of the genus Portunus (Crustacea, Brachyura, Portunidae). Zoological Journal of the Linnean Society, 150, 211–220. Martin, J. W. & Davis, G. E. (2001). An updated classification of the recent Crustacea. Natural History Museum of Los Angeles County, Science Series, 39, 1–124. Martin, A. J., Rich, T. H., Poore, G. C. B., Schultz, M. B., Austin, C. M., Kool, L. et al. (2008). Fossil evidence in Australia for oldest known freshwater crayfish of Gondwana. Gondwana Research, 14, 287–296. Martins-Neto, R. G. & Mezzalira, S. (1991). Revisao dos Palemonideos Terciários Brasilieros (Crustacea, Caridea) com descriçao de novos taxa. Anais da Academia Brasiliera de Ciencias, 63, 361–367. Perez-Losada, M., Hoeg, J. T. & Crandall, K. (2004). Unraveling the evolutionary radiation of the thoracian barnacles using molecular and morphological evidence: a comparision of several divergence time estimation approaches. Systematic Biology, 53, 244–264. Porter, M. L., Perez-Losada, M. & Crandall, K. A. (2005). Model-based multi-locus estimation of decapod phylogeny and divergence times. Molecular Phylogenetics and Evolution, 37, 355–369. Posada, D. & Crandall, K. A. (1998). MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817–818. Rabadà, D. (1993). Crustáceos decápodos lacustres de las calizas litográficas del Cretácico inferior de España: Las Hoyas (Cuenca) y el Montsec de Rúbies (Lleida). Cuadernos de Geología Ibérica, 17, 345–370. Rambaut, A. & Drummond, A. J. (2007). Tracer v1.4. Available via http://tree.bio.ed.ac.uk/software/tracer/ Robles, R., Schubart, C. D., Conde, J. E., Carmona-Suarez, C., Alvarez, F., Villalobos, J. L. et al. (2007). Molecular phylogeny of the American Callinectes Stimpson, 1860 (Brachyura: Portunidae), based on two partial mitochondrial genes. Marine Biology, 150, 1265–1274. Robles, R., Tudge, C. C., Dworschak, P. C., Poore, G. C. B. & Felder, D. L. (2009). Molecular phylogeny of the Thalassinidea based on nuclear and mitochondrial genes. In J. W. Martin, K. A. Crandall & D. L. Felder (Eds) Decapod Crustacean Phylogenetics (Crustacean Issues 18) (pp. 301–318). Bocan Raton, FL: CRC Press. Scholtz, G. & Richter, S. (1995). Phylogenetic systematics of the reptantian Decapoda (Crustacea, Malacostraca). Zoological Journal of the Linnean Society, 113, 289–328. Schram, F. R. (1986). Crustacea. New York: Oxford University Press. Schram, F. R. & Dixon, C. J. (2004). Decapod phylogeny: addition of fossil evidence to a robust morphological cladistic data set. Bulletin of the Mitzunami Fossil Museum, 31, 1–19. Schram, F. R., Feldmann, R. M. & Copeland, M. J. (1978). The Late Devonian Palaeopalaemonidae and the earliest decapod crustaceans. Journal of Palaeontology, 52, 1375–1387. Schubart, C. D., Neigel, J. E. & Felder, D. L. (2000). Use of the mitochondrial 16S rRNA gene for phylogenetic and population studies of Crustacea. Crustacean Issues, 12, 817–830. Schweitzer, C. E. & Feldmann, R. M. (2000a). First notice of the Chirostylidae (Decapoda) in the fossil record and new Tertiary Galatheidae (Decapoda) from the Americas. Bulletin of the Mizunami Fossil Museum, 27, 147–165. Schweitzer, C. E. & Feldmann, R. M. (2000b). Reevaluation of the Cancridea Latreille, 1803 (Decapoda: Brachyura) including three new genera and three new species. Contributions to Zoology, 69, 233–250. Spears, T., Abele, L. G. & Kim, W. (1992). The monophyly of brachyuran crabs: a phylogenetic study based on 18S rRNA. Systematic Biology, 41, 446–461. Spears, T., Abele, L. G. & Applegate, M. A. (1994). Phylogenetic study of cirripedes and selected relatives (Thecostraca) based on 18S rDNA sequence analysis. Journal of Crustacean Biology, 14, 641–656. Stamatakis, A., Ludwig, T. & Meier, H. (2005). RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees. Bioinformatics, 21, 456–463. Stamatakis, A., Blagojevic, F., Nikolopoulos, D. S. & Antonopoulos, C. D. (2007). Exploring new search algorithms and hardware for phylogenetics: RAxML meets the IBM cell. Journal of Vlsi Signal Processing Systems for Signal Image and Video Technology, 48, 271–286. Stamatakis, A., Hoover, P. & Rougemont, J. (2008). A rapid bootstrap algorithm for the RAxML Web Servers. Systematic Biology, 57, 758–771. Von Sternberg, R. & Schotte, M. (2004). A new anchialine shrimp of the genus Procaris (Crustacea: Decapoda: Procarididae) from the Yucatan Peninsula. Proceedings of the Biological Society of Washington, 117, 514–522. Stillman, J. H. & Reeb, C. A. (2001). Molecular phylogeny of eastern Pacific porcelain crabs, genera Petrolisthes and Pachycheles, based on the mtDNA 16S rDNA sequence: phylogeographic and systematic implications. Molecular Phylogenetics and Evolution, 19, 236–245. Suzuki, Y., Glazko, G. V. & Net, M. (2002). Overcredibility of molecular phylogenies obtained by Bayesian phylogenetics. Proceeding of the National Academy of Sciences, 99, 16138–16143. Thorne, J. L. (2003). MULTIDIVTIME v9/25/03. http://statgen.ncsu.edu/thorne/multidivtime.html. Bioinformatics Research Center, North Carolina State University. Thorne, J. L. & Kishino, H. (2002). Divergence time and evolutionary rate estimation with multilocus data. Systematic Biology, 51, 689–702. Thorne, J. L., Kishino, H. & Painter, I. S. (1998). Estimating the rate of evolution of the rate of molecular evolution. Molecular Biology and Evolution, 15, 1647–1657. Toon, A., Finley, M., Staples, J. & Crandall, K. A. (2009). Decapod phylogenetics and molecular evolution. In J. W. Martin, K. A. Crandall & D. L. Felder (Eds) Decapod Crustacean Phylogenetics (Crustacean Issues 18) (pp. 15–29). Bocan Raton, FL: CRC Press. Tsang, L. M., Lin, F. J., Chu, K. H. & Chan, T. Y. (2008a). Phylogeny of Thalassinidea (Crustacea, Decapoda) inferred from three rDNA sequences: implications for morphological evolution and superfamily classification. Journal of Zoological Systematics and Evolutionary Research, 46, 216–223. Tsang, L. M., Ma, K. Y., Ahyong, S. T., Chan, T. Y. & Chu, K. H. (2008b). Phylogeny of Decapoda using two nuclear protein-coding genes: origin and evolution of the Reptantia. Molecular Phylogenetics and Evolution, 48, 359–368. Tudge, C. C. & Cunningham, C. W. (2002). Molecular phylogeny of the mud lobsters and mud shrimps (Crustacea: Decapoda: Thalassinidea) using nuclear 18S rDNA and mitochondrial 16S rDNA. Invertebrate Systematics, 16, 839– 847. Van Straelen, V. (1928). On a fossil freshwater crayfish from eastern Mongolia. Bulletin of the Geological Society of China, 7, 173–178. Whitfield, R. P. (1880). Notice of new forms of fossil crustaceans from the Upper Devonian rocks of Ohio, with descriptions of a new genera and species. American Journal of Science, 19, 33–42. Whiting, M. F. (2002). Mecoptera is paraphyletic: multiple genes and phylogeny of Mecoptera and Siphonaptera. Zoologica Scripta, 31, 93–104. Whiting, M. F., Carpenter, J. C., Wheeler, Q. D. & Wheeler, W. C. (1997). The strepsiptera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology. Systematic Biology, 46, 1–68. Citing Literature Volume39, Issue2March 2010Pages 198-212 ReferencesRelatedInformation

Referência(s)
Altmetric
PlumX