Portal de Periódicos da CAPES

A Suite of Solid‐State NMR Experiments for RNA Intranucleotide Resonance Assignment in a 21 kDa Protein–RNA Complex

2013; Wiley; Volume: 52; Issue: 38 Linguagem: Inglês

10.1002/anie.201304779

1521-3773

Alexander Marchanka, Bernd Simon, Teresa Carlomagno,

RNA modifications and cancer

Angewandte Chemie International EditionVolume 52, Issue 38 p. 9996-10001 Communication A Suite of Solid-State NMR Experiments for RNA Intranucleotide Resonance Assignment in a 21 kDa Protein–RNA Complex† Dr. Alexander Marchanka, Dr. Alexander Marchanka Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstr. 1, 69117 Heidelberg (Germany)Search for more papers by this authorDr. Bernd Simon, Dr. Bernd Simon Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstr. 1, 69117 Heidelberg (Germany)Search for more papers by this authorDr. Teresa Carlomagno, Corresponding Author Dr. Teresa Carlomagno [email protected] Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstr. 1, 69117 Heidelberg (Germany)Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstr. 1, 69117 Heidelberg (Germany)===Search for more papers by this author Dr. Alexander Marchanka, Dr. Alexander Marchanka Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstr. 1, 69117 Heidelberg (Germany)Search for more papers by this authorDr. Bernd Simon, Dr. Bernd Simon Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstr. 1, 69117 Heidelberg (Germany)Search for more papers by this authorDr. Teresa Carlomagno, Corresponding Author Dr. Teresa Carlomagno [email protected] Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstr. 1, 69117 Heidelberg (Germany)Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstr. 1, 69117 Heidelberg (Germany)===Search for more papers by this author First published: 26 July 2013 https://doi.org/10.1002/anie.201304779Citations: 28 † This work was supported by the DFG (grant number CA294/3-1), by the BMBF though project 0315870 and by the EMBL. We thank Prof. Bernd Reif (TU, Munich) for useful discussions. Read the full textAboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL Graphical Abstract Intranucleotide resonance of the 26mer box C/D RNA in complex with the L7Ae protein were assigned by solid-state NMR (ssNMR; see picture) spectroscopy. This investigation opens the way for studying RNA in large protein–RNA complexes by ssNMR spectroscopy. References 1H. J. M. de Groot, Curr. Opin. Struct. Biol. 2000, 10, 593– 600. 2S. J. Opella, F. M. Marassi, Chem. Rev. 2004, 104, 3587– 3606. 3F. Castellani, B. van Rossum, A. Diehl, M. Schubert, K. Rehbein, H. Oschkinat, Nature 2002, 420, 98– 102. 4A. T. Petkova, Y. Ishii, J. J. Balbach, O. N. Antzutkin, R. D. Leapman, F. Delaglio, R. Tycko, Proc. Natl. Acad. Sci. USA 2002, 99, 16742– 16747. 5C. P. Jaroniec, C. E. MacPhee, N. S. Astrof, C. M. Dobson, R. G. Griffin, Proc. Natl. Acad. Sci. USA 2002, 99, 16748– 16753. 6C. P. Jaroniec, C. E. MacPhee, V. S. Bajaj, M. T. McMahon, C. M. Dobson, R. G. Griffin, Proc. Natl. Acad. Sci. USA 2004, 101, 711– 716. 7A. T. Petkova, W. M. Yau, R. Tycko, Biochemistry 2006, 45, 498– 512. 8K. Riedel, J. Leppert, O. Ohlenschläger, M. Görlach, R. Ramachandran, J. Biomol. NMR 2005, 31, 331– 336. 9K. Riedel, J. Leppert, O. Ohlenschläger, M. Görlach, R. Ramachandran, J. Biomol. NMR 2005, 31, 49– 57. 10C. Herbst, K. Riedel, Y. Ihle, J. Leppert, O. Ohlenschläger, M. Görlach, R. Ramachandran, J. Biomol. NMR 2008, 41, 121– 125. 11G. L. Olsen, M. F. Bardaro, D. C. Echodu, G. P. Drobny, G. Varani, J. Am. Chem. Soc. 2010, 132, 303– 308. 12A. V. Cherepanov, C. Glaubitz, H. Schwalbe, Angew. Chem. 2010, 122, 4855– 4859; Angew. Chem. Int. Ed. 2010, 49, 4747– 4750. 13S. Jehle, M. Falb, J. P. Kirkpatrick, H. Oschkinat, B. J. van Rossum, G. Althoff, T. Carlomagno, J. Am. Chem. Soc. 2010, 132, 3842– 3846. 14S. Asami, M. Rakwalska-Bange, T. Carlomagno, B. Reif, Angew. Chem. 2013, 125, 2401– 2405; Angew. Chem. Int. Ed. 2013, 52, 2345– 2349. 15W. Huang, G. Varani, G. P. Drobny, J. Biomol. NMR 2011, 51, 347– 356. 16W. Huang, G. Varani, G. P. Drobny, J. Am. Chem. Soc. 2010, 132, 17643– 17645. 17W. Huang, M. F. Bardaro, G. Varani, G. P. Drobny, J. Magn. Reson. 2012, 223, 51– 54. 18G. L. Olsen, T. E. Edwards, P. Deka, G. Varani, S. T. Sigurdsson, G. P. Drobny, Nucleic Acids Res. 2005, 33, 3447– 3454. 19T. Moore, Y. M. Zhang, M. O. Fenley, H. Li, Structure 2004, 12, 807– 818. 20S. L. Reichow, T. Hamma, A. R. Ferre-D′Amare, G. Varani, Nucleic Acids Res. 2007, 35, 1452– 1464. 21S. Xue, R. Y. Wang, F. P. Yang, R. M. Terns, M. P. Terns, X. X. Zhang, E. S. Maxwel, H. Li, Mol. Cell 2010, 39, 939– 949. 22Z. Kiss-Laszlo, Y. Henry, T. Kiss, EMBO J. 1998, 17, 797– 807. 23W. A. Decatur, M. J. Fournier, J. Biol. Chem. 2003, 278, 695– 698. 24M. Falb, I. Amata, F. Gabel, B. Simon, T. Carlomagno, Nucleic Acids Res. 2010, 38, 6274– 6285. 25M. Baldus, A. T. Petkova, J. Herzfeld, R. G. Griffin, Mol. Phys. 1998, 95, 1197– 1207. 26I. Bertini, A. Bhaumik, G. De Paëpe, R. G. Griffin, M. Lelli, J. R. Lewandowski, C. Luchinat, J. Am. Chem. Soc. 2010, 132, 1032– 1040. 27W. T. Franks, D. H. Zhou, B. J. Wylie, B. G. Money, D. T. Graesser, H. L. Frericks, G. Sahota, C. M. Rienstra, J. Am. Chem. Soc. 2005, 127, 12291– 12305. 28J. Pauli, M. Baldus, B. van Rossum, H. de Groot, H. Oschkinat, ChemBioChem 2001, 2, 272– 281. 29A. Schuetz, C. Wasmer, B. Habenstein, R. Verel, J. Greenwald, R. Riek, A. Böckmann, B. H. Meier, ChemBioChem 2010, 11, 1543– 1551. 30A. W. Hing, S. Vega, J. Schaefer, J. Magn. Reson. 1992, 96, 205– 209. 31C. A. Michal, L. W. Jelinski, J. Am. Chem. Soc. 1997, 119, 9059– 9060. 32C. P. Jaroniec, C. Filip, R. G. Griffin, J. Am. Chem. Soc. 2002, 124, 10728– 10742. 33L. B. Andreas, M. T. Eddy, J. J. Chou, R. G. Griffin, J. Am. Chem. Soc. 2012, 134, 7215– 7218. 34M. J. Bayro, M. Huber, R. Ramachandran, T. C. Davenport, B. H. Meier, M. Ernst, R. G. Griffin, J. Chem. Phys. 2009, 130, 114506. 35A. E. Bennett, J. H. Ok, R. G. Griffin, S. Vega, J. Chem. Phys. 1992, 96, 8624– 8627. 36S. S. Wijmenga, B. N. M. van Buuren, Prog. Nucl. Magn. Reson. Spectrosc. 1998, 32, 287– 387. 37J. H. Ippel, S. S. Wijmenga, R. de Jong, H. A. Heus, C. W. Hilbers, E. de Vroom, G. A. van der Marel, J. H. van Boom, Magn. Reson. Chem. 1996, 34, S 156–S 176. 38T. Fujiwara, Y. Todokoro, H. Yanagishita, M. Tawarayama, T. Kohno, K. Wakamatsu, H. Akutsu, J. Biomol. NMR 2004, 28, 311– 325. 39V. Sklenář, R. D. Peterson, M. R. Rejante, E. Wang, J. Feigon, J. Am. Chem. Soc. 1993, 115, 12181– 12182. 40N. M. Szeverenyi, M. J. Sullivan, G. E. Maciel, J. Magn. Reson. 1982, 47, 462– 475. 41K. Takegoshi, S. Nakamura, T. Terao, Chem. Phys. Lett. 2001, 344, 631– 637. 42V. Sklenář, R. D. Peterson, M. R. Rejante, J. Feigon, J. Biomol. NMR 1993, 3, 721– 727. 43E. Daviso, M. T. Eddy, L. B. Andreas, R. G. Griffin, J. Herzfeld, J. Biomol. NMR 2013, 55, 257– 265. 44F. Castellani, B. J. van Rossum, A. Diehl, K. Rehbein, H. Oschkinat, Biochemistry 2003, 42, 11476– 11483. 45J. P. Simorre, G. R. Zimmermann, L. Mueller, A. Pardi, J. Biomol. NMR 1996, 7, 153– 156. 46J. P. Simorre, G. R. Zimmermann, A. Pardi, B. T. Farmer, L. Mueller, J. Biomol. NMR 1995, 6, 427– 432. 47C. Farès, I. Amata, T. Carlomagno, J. Am. Chem. Soc. 2007, 129, 15814– 15823. 48B. Fürtig, C. Richter, J. Wohnert, H. Schwalbe, ChemBioChem 2003, 4, 936– 962. 49L. Li, K. Q. Ye, Nature 2006, 443, 302– 307. 50C. R. Morcombe, K. W. Zilm, J. Magn. Reson. 2003, 162, 479– 486. 51B. R. Seavey, E. A. Farr, W. M. Westler, J. L. Markley, J. Biomol. NMR 1991, 1, 217– 230. 52F. Delaglio, S. Grzesiek, G. W. Vuister, G. Zhu, J. Pfeifer, A. Bax, J. Biomol. NMR 1995, 6, 277– 293. 53B. A. Johnson, R. A. Blevins, J. Biomol. NMR 1994, 4, 603– 614. Citing Literature Supporting Information As a service to our authors and readers, this journal provides supporting information supplied by the authors. Such materials are peer reviewed and may be re-organized for online delivery, but are not copy-edited or typeset. Technical support issues arising from supporting information (other than missing files) should be addressed to the authors. Filename Description anie_201304779_sm_miscellaneous_information.pdf627.4 KB miscellaneous_information Please note: The publisher is not responsible for the content or functionality of any supporting information supplied by the authors. Any queries (other than missing content) should be directed to the corresponding author for the article. Volume52, Issue38September 16, 2013Pages 9996-10001 ReferencesRelatedInformation