Portal de Periódicos da CAPES

Gateways to the FANTOM5 promoter level mammalian expression atlas

2015; Springer Science+Business Media; Volume: 16; Issue: 1 Linguagem: Inglês

10.1186/s13059-014-0560-6

1465-6914

Marina Lizio, Jayson Harshbarger, Hisashi Shimoji, Jessica Severin, Takeya Kasukawa, Serkan Sahin, Imad Abugessaisa, Shiro Fukuda, Fumi Hori, Sachi Ishikawa-Kato, Chris Mungall, Peter Arner, J. Kenneth Baillie, Nicolas Bertin, Hidemasa Bono, Michiel de Hoon, Alexander D. Diehl, Emmanuel Dimont, Tom C. Freeman, Kaori Fujieda, Yoshihide Hayashizaki, Rajaram Kaliyaperumal, Toshiaki Katayama, Timo Lassmann, Terrence F. Meehan, Koro Nishikata, Hiromasa Ono, Michael Rehli, Albin Sandelin, Erik Schultes, Peter A.C. ‘t Hoen, Zuotian Tatum, Mark Thompson, Tetsuro Toyoda, Derek Wright, Carsten O. Daub, Masayoshi Itoh, Piero Carninci, Yoshihide Hayashizaki, Alistair R. R. Forrest, Hideya Kawaji,

Epigenetics and DNA Methylation

Abstract The FANTOM5 project investigates transcription initiation activities in more than 1,000 human and mouse primary cells, cell lines and tissues using CAGE. Based on manual curation of sample information and development of an ontology for sample classification, we assemble the resulting data into a centralized data resource ( http://fantom.gsc.riken.jp/5/ ). This resource contains web-based tools and data-access points for the research community to search and extract data related to samples, genes, promoter activities, transcription factors and enhancers across the FANTOM5 atlas.