Artigo Acesso aberto Revisado por pares

Identification and characterization of two alternatively spliced transcript variants of human liver X receptor alpha

2005; Elsevier BV; Volume: 46; Issue: 12 Linguagem: Inglês

10.1194/jlr.m500157-jlr200

ISSN

1539-7262

Autores

Mingyi Chen, Simon W. Beaven, Peter Tontonoz,

Tópico(s)

Peroxisome Proliferator-Activated Receptors

Resumo

The liver X receptor α (LXRα) is a member of the nuclear hormone receptor superfamily that plays an important role in lipid homeostasis. Here we characterize two alternative human LXRα transcripts, designated LXRα2 and LXRα3. All three LXRα isoforms are derived from the same gene via alternative splicing and differential promoter usage. The LXRα2 isoform lacks the first 45 amino acids of LXRα1, and is generated through the use of a novel promoter and first exon. LXRα3 lacks 50 amino acids within the ligand binding domain and is generated through alternative recognition of the 3′-splice site in exon 6. LXRα2 and LXRα3 are expressed at lower levels compared with LXRα1 in most tissues, except that LXRα2 expression is dominant in testis. Both LXRα2 and LXRα3 heterodimerize with the retinoid X receptor and bind to LXR response elements. LXRα2 shows reduced transcriptional activity relative to LXRα1, indicating that the N-terminal domain of LXRα is essential for its full transcriptional activity. LXRα3 is unable to bind ligand and is transcriptionally inactive.These observations outline a previously unrecognized role for the N terminus in LXR function and suggest that the expression of alternative LXRα transcripts in certain biological contexts may impact LXR signaling and lipid metabolism. The liver X receptor α (LXRα) is a member of the nuclear hormone receptor superfamily that plays an important role in lipid homeostasis. Here we characterize two alternative human LXRα transcripts, designated LXRα2 and LXRα3. All three LXRα isoforms are derived from the same gene via alternative splicing and differential promoter usage. The LXRα2 isoform lacks the first 45 amino acids of LXRα1, and is generated through the use of a novel promoter and first exon. LXRα3 lacks 50 amino acids within the ligand binding domain and is generated through alternative recognition of the 3′-splice site in exon 6. LXRα2 and LXRα3 are expressed at lower levels compared with LXRα1 in most tissues, except that LXRα2 expression is dominant in testis. Both LXRα2 and LXRα3 heterodimerize with the retinoid X receptor and bind to LXR response elements. LXRα2 shows reduced transcriptional activity relative to LXRα1, indicating that the N-terminal domain of LXRα is essential for its full transcriptional activity. LXRα3 is unable to bind ligand and is transcriptionally inactive. These observations outline a previously unrecognized role for the N terminus in LXR function and suggest that the expression of alternative LXRα transcripts in certain biological contexts may impact LXR signaling and lipid metabolism. Nuclear hormone receptors are transcription factors that are involved in numerous biological processes, including reproduction, development, and metabolism (1Chawla A. Repa J.J. Evans R.M. Mangelsdorf D.J. Nuclear receptors and lipid physiology: opening the X-files.Science. 2001; 294: 1866-1870Google Scholar). Most of these receptors are comprised of a ligand-independent transcriptional activation function (AF1) domain at the N terminus, a DNA binding domain (DBD), a hinge region, and a ligand binding domain (LBD). The LBD possesses a dimerization interface, and a ligand-dependent activation function (AF2) region at the carboxyl terminus (2Robinson-Rechavi M. Garcia H. Escriva Laudet V. The nuclear receptor superfamily.J. Cell Sci. 2003; 116: 585-586Google Scholar). The transcriptional activity of most nuclear hormone receptors is stimulated by specific small-molecule ligands. Binding of ligand to the LBD results in a conformational change of the receptor, release of corepressors, recruitment of coactivators, and transcriptional activation (3Kliewer S.A. Lehmann J.M. Willson T.M. Orphan nuclear receptors: shifting endocrinology into reverse.Science. 1999; 284: 757-760Google Scholar, 4Xu L. Glass C.K. Rosenfeld M.G. Coactivator and corepressor complexes in nuclear receptor function.Curr. Opin. Genet. Dev. 1999; 9: 140-147Google Scholar).The liver X receptors (LXRs) are nuclear hormone receptors that play a key role in the regulation of lipoprotein metabolism (5Repa J.J. Mangelsdorf D.J. The role of orphan nuclear receptors in the regulation of cholesterol homeostasis.Annu. Rev. Cell Dev. Biol. 2000; 16: 459-481Google Scholar, 6Tontonoz P. Mangelsdorf D.J. Liver X receptor signaling pathways in cardiovascular disease.Mol. Endocrinol. 2003; 17: 985-993Google Scholar). LXRs are activated by oxidized derivatives of cholesterol that serve as ligands (7Lehmann J.M. Kliewer S.A. Moore L.B. Smith-Oliver T.A. Oliver B.B. Su J.L. Sundseth S.S. Winegar D.A. Blanchard D.E. Spencer T.A. et al.Activation of the nuclear receptor LXR by oxysterols defines a new hormone response pathway.J. Biol. Chem. 1997; 272: 3137-3140Google Scholar, 8Janowski B.A. Willy P.J. Devi T.R. Falck J.R. Mangelsdorf D.J. An oxysterol signalling pathway mediated by the nuclear receptor LXR alpha.Nature. 1996; 383: 728-731Google Scholar, 9Peet D.J. Janowski B.A. Mangelsdorf D.J. The LXRs: a new class of oxysterol receptors.Curr. Opin. Genet. Dev. 1998; 8: 571-575Google Scholar). Two different LXRs have been described, LXRα (NR1H3) and LXRβ (NR1H2). LXRα is expressed at high levels in liver, adipose tissue, macrophages, intestine, kidney, and spleen, whereas LXRβ is expressed ubiquitously (9Peet D.J. Janowski B.A. Mangelsdorf D.J. The LXRs: a new class of oxysterol receptors.Curr. Opin. Genet. Dev. 1998; 8: 571-575Google Scholar). Both LXRs heterodimerize with the retinoid X receptor (RXR) and stimulate transcription through binding to DR-4 response elements in target gene promoters (10Willy P.J. Umesono K. Ong E.S. Evans R.M. Heyman R.A. Mangelsdorf D.J. LXR, a nuclear receptor that defines a distinct retinoid response pathway.Genes Dev. 1995; 9: 1033-1045Google Scholar).To date, more than a dozen LXR target genes have been identified. They are involved in hepatic bile acid and fatty acid synthesis, glucose metabolism, and sterol efflux (11Luo Y. Tall A.R. Sterol upregulation of human CETP expression in vitro and in transgenic mice by an LXR element.J. Clin. Invest. 2000; 105: 513-520Google Scholar, 12Joseph S.B. Laffitte B.A. Patel P.H. Watson M.A. Matsukuma K.E. Walczak R. Collins J.L. Osborne T.F. Tontonoz P. Direct and indirect mechanisms for regulation of fatty acid synthase gene expression by liver X receptors.J. Biol. Chem. 2002; 277: 11019-11025Google Scholar, 13Laffitte B.A. Joseph S.B. Chen M. Castrillo A. Repa J. Wilpitz D. Mangelsdorf D. Tontonoz P. The phospholipid transfer protein gene is a liver X receptor target expressed by macrophages in atherosclerotic lesions.Mol. Cell. Biol. 2003; 23: 2182-2191Google Scholar, 14Laffitte B.A. Repa J.J. Joseph S.B. Wilpitz D.C. Kast H.R. Mangelsdorf D.J. Tontonoz P. LXRs control lipid-inducible expression of the apolipoprotein E gene in macrophages and adipocytes.Proc. Natl. Acad. Sci. USA. 2001; 98: 507-512Google Scholar, 15Laffitte B.A. Joseph S.B. Walczak R. Pei L. Wilpitz D.C. Collins J.L. Tontonoz P. Autoregulation of the human liver X receptor alpha promoter.Mol. Cell. Biol. 2001; 21: 7558-7568Google Scholar, 16Laffitte B.A. Chao L.C. Li J. Walczak R. Hummasti S. Joseph S.B. Castrillo A. Wilpitz D.C. Mangelsdorf D.J. Collins J.L. et al.Activation of liver X receptor improves glucose tolerance through coordinate regulation of glucose metabolism in liver and adipose tissue.Proc. Natl. Acad. Sci. USA. 2003; 100: 5419-5424Google Scholar). In the liver, LXRs regulate gene expression of CYP7A (17Peet D.J. Turley S.D. Ma W. Janowski B.A. Lobaccaro J.M. Hammer R.E. Mangelsdorf D.J. Cholesterol and bile acid metabolism are impaired in mice lacking the nuclear oxysterol receptor LXR alpha.Cell. 1998; 93: 693-704Google Scholar) and sterol-regulatory binding element protein 1c (18Repa J.J. Liang G. Ou J. Bashmakov Y. Lobaccaro J.M. Shimomura I. Shan B. Brown M.S. Goldstein J.L. Mangelsdorf D.J. Regulation of mouse sterol regulatory element-binding protein-1c gene (SREBP-1c) by oxysterol receptors, LXRalpha and LXRbeta.Genes Dev. 2000; 14: 2819-2830Google Scholar), which are involved in cholesterol and fatty acid metabolism. In macrophages and other peripheral cell types, LXRs control the transcription of several genes involved in cellular cholesterol efflux, including ATP binding cassette transporter A1 (ABCA1) (19Chawla A. Boisvert W.A. Lee C.H. Laffitte B.A. Barak Y. Joseph S.B. Liao D. Nagy L. Edwards P.A. Curtiss L.K. et al.A PPAR gamma-LXR-ABCA1 pathway in macrophages is involved in cholesterol efflux and atherogenesis.Mol. Cell. 2001; 7: 161-171Google Scholar, 20Venkateswaran A. Laffitte B.A. Joseph S.B. Mak P.A. Wilpitz D.C. Edwards P.A. Tontonoz P. Control of cellular cholesterol efflux by the nuclear oxysterol receptor LXR alpha.Proc. Natl. Acad. Sci. USA. 2000; 97: 12097-12102Google Scholar), ABCG1 (21Venkateswaran A. Repa J.J. Lobaccaro J.M. Bronson A. Mangelsdorf D.J. Edwards P.A. Human white/murine ABC8 mRNA levels are highly induced in lipid-loaded macrophages. A transcriptional role for specific oxysterols.J. Biol. Chem. 2000; 275: 14700-14707Google Scholar), and apolipoprotein E (14Laffitte B.A. Repa J.J. Joseph S.B. Wilpitz D.C. Kast H.R. Mangelsdorf D.J. Tontonoz P. LXRs control lipid-inducible expression of the apolipoprotein E gene in macrophages and adipocytes.Proc. Natl. Acad. Sci. USA. 2001; 98: 507-512Google Scholar). LXRs also influence lipoprotein metabolism through the control of modifying enzymes such as lipoprotein lipase (22Zhang Y. Repa J.J. Gauthier K. Mangelsdorf D.J. Regulation of lipoprotein lipase by the oxysterol receptors, LXRalpha and LXRbeta.J. Biol. Chem. 2001; 276: 43018-43024Google Scholar), cholesteryl ester transfer protein (11Luo Y. Tall A.R. Sterol upregulation of human CETP expression in vitro and in transgenic mice by an LXR element.J. Clin. Invest. 2000; 105: 513-520Google Scholar), and phospholipid transfer protein (13Laffitte B.A. Joseph S.B. Chen M. Castrillo A. Repa J. Wilpitz D. Mangelsdorf D. Tontonoz P. The phospholipid transfer protein gene is a liver X receptor target expressed by macrophages in atherosclerotic lesions.Mol. Cell. Biol. 2003; 23: 2182-2191Google Scholar). Ligands for LXR have been shown to inhibit intestinal cholesterol absorption, promote hepatic sterol excretion, and reduce atherosclerosis in murine models (18Repa J.J. Liang G. Ou J. Bashmakov Y. Lobaccaro J.M. Shimomura I. Shan B. Brown M.S. Goldstein J.L. Mangelsdorf D.J. Regulation of mouse sterol regulatory element-binding protein-1c gene (SREBP-1c) by oxysterol receptors, LXRalpha and LXRbeta.Genes Dev. 2000; 14: 2819-2830Google Scholar, 23Yu L. York J. Bergmann K. von Lutjohann D. Cohen J.C. Hobbs H.H. Stimulation of cholesterol excretion by the liver X receptor agonist requires ATP-binding cassette transporters G5 and G8.J. Biol. Chem. 2003; 278: 15565-15570Google Scholar, 24Repa J.J. Berge K.E. Pomajzl C. Richardson J.A. Hobbs H. Mangelsdorf D.J. Regulation of ATP-binding cassette sterol transporters ABCG5 and ABCG8 by the liver X receptors alpha and beta.J. Biol. Chem. 2002; 277: 18793-18800Google Scholar, 25Joseph S.B. McKilligin E. Pei L. Watson M.A. Collins A.R. Laffitte B.A. Chen M. Noh G. Goodman J. Hagger G.N. et al.Synthetic LXR ligand inhibits the development of atherosclerosis in mice.Proc. Natl. Acad. Sci. USA. 2002; 99: 7604-7609Google Scholar).Multiple isoforms have been identified for many members of the nuclear hormone receptor family. In several cases, different receptor isoforms have been found to have distinct activities and to play distinct biological roles (2Robinson-Rechavi M. Garcia H. Escriva Laudet V. The nuclear receptor superfamily.J. Cell Sci. 2003; 116: 585-586Google Scholar, 26Ruau D. Duarte J. Ourjdal T. Perriere G. Laudet V. Robinson-Rechavi M. Update of NUREBASE: nuclear hormone receptor functional genomics.Nucleic Acids Res. 2004; 32: D165-D167Google Scholar). Here we describe the identification and characterization of two isoforms of human LXRα that have distinct expression patterns and altered transcriptional activity.EXPERIMENTAL PROCEDURESReagents and plasmidsGW3965 and T0901317 were provided by T. Willson and J. Collins at GlaxoSmithKline. Ligands were dissolved in DMSO prior to use in cell culture. The full-length coding regions of human LXR isoforms were amplified by PCR using specific primers and subcloned into BamHI/XhoI sites of the mammalian expression vector pCMX-PL1, to create pCMX-LXRα1, pCMX-LXRα2, and pCMX-LXRα3, respectively. Three isoforms of human LXRα were also subcloned into pEGFP-C1 vector using XhoI/BamHI sites to allow expression of N-terminal GFP-hLXRα fusion proteins. For retroviral expression constructs, inserts were excised from the pEGFP vectors using BglII/XhoI restriction enzymes and subcloned into BamHI/SalI sites of the pBabe vector to generate pBABE-GFP and pBABE-GFP-LXRα1, -LXRα2, and -LXRα3. The isoforms were also cloned into pShuttle-1 vector, which includes three repeats of FLAG tag in the N terminus. The dominant negative (ΔAF2) of human LXRα was generated by cloning of amino acids 1–435 of hLXRα1 to pCMV-Tag3C (Stratagene) vector via BamHI/XhoI sites. All plasmids were confirmed by DNA sequencing.Cell culture, transfection, and reporter gene assaysHepG2 and HEK-293 cells were cultured in modified Eagle's medium containing 10% fetal bovine serum or lipoprotein-deficient fetal bovine serum (LPDS). Transient transfections were performed in triplicate in 48-well plates. Cells were transfected with reporter plasmid (100 ng/well), receptor plasmids (5–50 ng/well), pCMV-β-galactosidase (50 ng/well), and pTKCIII (to a total of 205 ng/well) using Lipofectamine 2000 reagent (Invitrogen). Following transfection, cells were incubated in modified Eagle's medium containing 10% LPDS and the indicated ligands or vehicle control for 24 h, and the results (mean ± SE; three experiments) were determined. Luciferase activities were assayed and normalized to β-galactosidase activity.Quantitative PCRReal-time quantitative PCR assays were performed using an Applied Biosystems 7700 sequence detector. Total RNA was reverse transcribed with random hexamers by using TaqMan reverse-transcription reagents (Applied Biosystems) according to the manufacturer's protocol. Real-time PCR Sybergreen assays for LXRα transcript levels were performed essentially as described (15Laffitte B.A. Joseph S.B. Walczak R. Pei L. Wilpitz D.C. Collins J.L. Tontonoz P. Autoregulation of the human liver X receptor alpha promoter.Mol. Cell. Biol. 2001; 21: 7558-7568Google Scholar). Samples were analyzed simultaneously for 36B4 expression. Quantitative expression values were extrapolated from separate standard curves. Each sample was assayed in duplicate and normalized to 36B4. The sequences for primers are as follows: hLXRα1, 5′–3′ (forward primer, CTGTGCCTGACATTCCTCCTG), 5′–3′ (reverse primer, CTGGCTGCTTGCATCCTGT); hLXRα2, 5′–3′ (forward primer, TGGCGGAGGAGCATAAGAAG), 5′–3′ (reverse primer, CTGGCTGCTTGCATCCTGT); hLXRα3, 5′–3′ (forward primer, GACCGGCTTCGAGTCACGGTGA), 5′–3′ (reverse primer, CACTCCCAGGGTTGTACCTCC).Gel shift assaysHuman LXRα isoforms and human RXR were synthesized in vitro using the TNT T7-coupled reticulocyte system (Promega). To compare transcription/translation efficiency of the expression constructs expressing different human LXR isoforms, equal volumes of 35S-labeled lysates were loaded and separated on an 8% SDS-polyacrylamide gel. Gel shift assays were performed as described (15Laffitte B.A. Joseph S.B. Walczak R. Pei L. Wilpitz D.C. Collins J.L. Tontonoz P. Autoregulation of the human liver X receptor alpha promoter.Mol. Cell. Biol. 2001; 21: 7558-7568Google Scholar) using in vitro-translated proteins. Binding reactions were carried out in a buffer containing 10 mM HEPES, pH 7.8, 100 mM KCl, 0.2% Nonidet P-40, 6% glycerol, 0.3 mg/ml BSA, 1 mM dithiothreitol, 2 μg of poly(dI-dC), 1–3 μl each of in vitro-translated receptors and 32P end-labeled oligonucleotide. DNA-protein complexes were resolved on a 5% polyacrylamide gel. The sequence of the rat FAS LXRE oligonucleotide was (only one strand shown): 5′-gatcacgatgaccggtagtaaccccgcc-3′.Fluorescence microscopyCells were transfected with retroviral vectors pBABE-GFP, pBABE-GFPLXRα1, pBABE-GFPLXRα2, and pBABE-GFPLXRα3, and selected with puromycin to generate stable cell lines. The cells were seeded in 4-well chamber slides and fixed in 4% paraformaldehyde for 10 min at room temperature. Slides were mounted in Vectashield medium for fluorescence with 4′,6-diamidino-2-phenylindole (Vector) and analyzed under a Zeiss fluorescence microscope.Western blot analysisCells transiently or stably transfected with FLAG-LXRα constructs were lysed in radioimmunoprecipitation assay buffer. Supernatants were collected, and protein content was assayed using the Bio-Rad protein reagent. Samples containing equal amounts of protein were boiled in 250 mM Tris-HCl, pH 6.8, 2% SDS, 10% glycerol, and 2% mercaptoethanol, and then size-separated in 8% SDS-PAGE. Proteins were transferred to nitrocellulose membrane. Protein expression was detected with HRP-anti-FLAG antibody (M2) from Sigma, and visualized by the ECL technique.RESULTSBy searching the expressed sequence tag (EST) database, we identified two cDNA clones similar to human LXRα (BC041172 and BC008819). Primers based on the EST sequences were used to amplify these LXRα transcripts from cDNA, and the products were subcloned and sequenced. Comparison of these sequences to the publicly available genomic sequence of human chromosome 11 (www.genome.ucsc.edu) revealed that these two new LXRα transcripts were generated by alternative RNA splicing. For clarity, we refer to the original isoform as LXRα1 and the two new isoforms as LXRα2 and LXRα3, respectively. Details of the genomic organization of the human LXRα gene and the origin of various LXRα transcripts are shown in Fig. 1A. Our data indicate that the gene encompasses more than 20 kbp and contains 12 potential exons. Three distinct LXRα transcripts are produced through alternative splicing and promoter usage. The original isoform, LXRα1, and the newly identified LXRα3 are transcribed from a promoter upstream of exons 1a and 1b (15Laffitte B.A. Joseph S.B. Walczak R. Pei L. Wilpitz D.C. Collins J.L. Tontonoz P. Autoregulation of the human liver X receptor alpha promoter.Mol. Cell. Biol. 2001; 21: 7558-7568Google Scholar). The LXRα2 mRNA is transcribed from an alternative promoter and exon 1c, located approximately 10 kb upstream of exon 1a. Figure 1B shows an alignment of the predicted amino acid sequences of the three LXRα isoforms. The LXRα1 protein has 447 amino acids with a predicted size of 50.4 kDa. Because exons 1a and 1b are noncoding, the choice of these exons does not impact protein sequence. By contrast, translation of the LXRα2 mRNA starts in exon 3, leading to a truncated protein lacking the N-terminal 45 amino acids of LXRα1. The LXRα3 mRNA is generated by the removal of exon 6 through alternative splicing, leading to an in-frame deletion of 50 amino acids from the LBD.Fig. 1Identification of new hLXRα isoforms. A: Schematic representation of human LXRα genomic structure and the corresponding isoform protein structure. Distinct modulator domains can be generated by alternative promoter usage and splicing (linked exons). Alternative splicing involving exons 1 and 2 generates the isoform LXRα2. Translation begins in exon 3 resulting in the truncation of the N-terminal 45 amino acids. LXRα3 is generated by the alternative splicing of exon 6, leading to an in-frame deletion of 50 amino acids in the ligand binding domain (LBD). DNA binding domain is shown (DBD). B: Alignment of the predicted amino acid sequence among human LXRα isoforms.View Large Image Figure ViewerDownload (PPT)To determine the absolute level of expression of LXRα isoforms in different tissues, total RNA from 20 human tissues was reverse transcribed and real-time quantitative PCR was performed. As shown in Fig. 2A, the various LXRα isoforms differ in their patterns of expression. In normal tissues, the highest hLXRα1 expression was detected in liver, heart, brain, spleen, and kidney. LXRα2 was highly expressed in testis, where it was the predominant isoform. LXRα3 was expressed at relatively lower levels in lung, thyroid gland, and spleen. In addition to normal tissues, transformed cell lines representing lymphoma, melanoma, osteosarcoma, meduloblastoma, and glioma were analyzed (Fig. 2B). Interestingly, the alternative isoforms α2 and α3 were somewhat more highly expressed in tumor cells compared with normal tissues. Furthermore, the cell type-specific nature of alternative transcript expression was also evident from these samples.Fig. 2Differential expression of human LXRα isoforms. A: Real-time quantitative PCR analysis of LXRα isoform expression in various human tissues. B: Real-time quantitative PCR analysis of human LXRα isoforms in various human tumor cell lines.View Large Image Figure ViewerDownload (PPT)To investigate whether the alternative LXRα2 and -α3 proteins were competent to bind DNA, they were produced in vitro using reticulocyte lysates. In vitro transcription/translation experiments confirmed the production of LXRα1, LXRα2, and LXRα3 proteins with expected molecular weights (Fig. 3A). Electrophoretic mobility shift assays revealed that both LXRα2 and LXRα3 retain the ability to heterodimerize with RXR and to bind the LXR response element (LXRE) from the fatty acid synthase (FAS) gene (12Joseph S.B. Laffitte B.A. Patel P.H. Watson M.A. Matsukuma K.E. Walczak R. Collins J.L. Osborne T.F. Tontonoz P. Direct and indirect mechanisms for regulation of fatty acid synthase gene expression by liver X receptors.J. Biol. Chem. 2002; 277: 11019-11025Google Scholar) (Fig. 3B). To address the transcriptional activity of the LXRα2 and LXRα3 isoforms, we performed transient transfections into HEK-293 cells. As expected, transfection of an LXRα1 cDNA expression vector stimulated activity of an LXRE-driven luciferase reporter in a ligand (T1317, 1 μM)-dependent manner (Fig. 3C). A low level of basal activity was observed with the LXRE reporter in the absence of transfected LXR due to the expression of endogenous LXRβ in HEK-293 cells. Transfection of an expression vector encoding the LXRα2 cDNA also promoted LXRE reporter expression, but it was clearly less active than LXRα1. By contrast, expression of LXRα3 cDNA did not stimulate reporter expression above basal levels. As a result of the deletion of the 50 amino acids encoded by exon 6, the LXRα3 protein lacks helixes 3 and 4 and part of helix 5, which comprise the ligand binding pocket of LXRα1 (27Svensson S. Ostberg T. Jacobsson M. Norstrom C. Stefansson K. Hallen D. Johansson I.C. Zachrisson K. Ogg D. Jendeberg L. Crystal structure of the heterodimeric complex of LXRalpha and RXRbeta ligand-binding domains in a fully agonistic conformation.EMBO J. 2003; 22: 4625-4633Google Scholar). On the basis of this structure, and consistent with our results in transient transfection assays, LXRα3 is predicted to be unable to bind ligand (T. Willson, personal communication). The results shown in Fig. 3 demonstrate that although both LXRα2 and LXRα3 bind DNA, they show altered transcriptional activity compared with LXRα1. Similar differences in activity between isoforms were observed when the natural LXR agonist 22(R)-hydroxycholesterol or the synthetic ligand GW3965 was used in place of T1317 (data not shown).Fig. 3Functional characterization of human LXRα isoforms. A: Analysis of in vitro-translated proteins. pCMX-LXRα1, -LXRα2, and -LXRα3 were synthesized in vitro in the presence of [35S]methionine. Three microliters of in vitro-translated lysates were analyzed on an 8% SDS-polyacrylamide gel. B: LXRα isoforms bind DNA by electrophoretic mobility shift assay. Equivalent amounts of in vitro-synthesized retinoid X receptor (RXR) in combination with LXRα1, LXRα2, or LXRα3. Protein was incubated with 32P-labeled FAS LXRE DNA probe, and the DNA-protein complex was resolved on a 5% polyacrylamide gel. C: hLXRα2 and LXRα3 proteins exhibit altered transcriptional activity. pCMX-LXRα1, -LXRα2, and -LXRα3 expression vectors were transfected into HEK-293 cells along with a pTk3×LXRE-Luc reporter construct. Each point is the average of triplicate experiments. Cells were treated with DMSO or T1317 (synthetic LXR agonist, 1 μM) for 24 h. The dominant-negative ligand-dependent activation function region (ΔAF2) construct is a mutant of LXRα lacking the AF2 domain (20Venkateswaran A. Laffitte B.A. Joseph S.B. Mak P.A. Wilpitz D.C. Edwards P.A. Tontonoz P. Control of cellular cholesterol efflux by the nuclear oxysterol receptor LXR alpha.Proc. Natl. Acad. Sci. USA. 2000; 97: 12097-12102Google Scholar). * P < 0.05 versus LXRα1 by Student's t-test (2-tailed). Data are presented as mean ± SEM.View Large Image Figure ViewerDownload (PPT)Presently, reliable antibodies recognizing the different human LXRα isoforms are not available. We therefore utilized GFP fusion proteins to study expression of the LXRα protein isoforms. We utilized retroviral transduction to generate HEK-293 cell lines expressing GFP-LXRα1, GFP-LXRα2, and GFP-LXRα3 fusion proteins. The cellular localization of the LXRα1, LXRα2, and LXRα3 proteins was visualized by fluorescence microscopy. Expression of the GFP-LXRα1 fusion protein in HEK-293 cells led to an exclusively nuclear distribution of fluorescence (Fig. 4A). Identical cellular localization was observed with GFP-LXRα2 and GFP-LXRα3 fusion proteins. Furthermore, the alternative LXRα cDNAs were expressed and translated at rates comparable to those of LXRα1. An equivalent amount of fusion protein was produced by the three expression vectors, as judged by fluorescence microscopy (Fig. 4A) and Western blotting, using an anti-GFP antibody (data not shown). When the activity of the three GFP-LXRα fusion proteins was compared in transient transfection assays, the results were similar to those obtained with native LXR isoform expression vectors. GFP-LXRα2 showed reduced activity compared with GFP-LXRα1, and GFP-LXRα3 was inactive (Fig. 4B).Fig. 4Subcellular localization and transcriptional activity of GFP-LXRα isoforms. HEK-293 cells were stably transduced with retroviral vectors expressing individual GFP-LXRα isoform fusion proteins. A: Analysis of subcellular localization by fluorescence microscopy. GFP-LXRα chimeras are shown in green. Nuclei were stained with 4′,6-diamidino-2-phenylindole (DMSO) (blue). B: GFP-LXRα isoforms differentially transactivate a pTk3×LXRE-Luc reporter construct in transient transfection assays. After transfection, cells were treated with DMSO or LXR ligand (T1317, 1 μM) for 24 h. Each point is the average of triplicate experiments. * P < 0.05 versus LXRα1 by Student's t-test (2-tailed). C: GFP-LXRα isoforms differentially regulate endogenous LXR target gene expression. HEK-293 cells stably expressing GFP-LXRα chimeras were analyzed for ATP binding cassette transporter A1 expression by real-time PCR. Cells were treated with DMSO or T1317 (1 μM) for 24 h. Data are presented as mean ± SEM.View Large Image Figure ViewerDownload (PPT)To determine whether the various LXRα isoforms also showed differential activity on endogenous target genes, we analyzed ABCA1 expression in HEK-293 cells transduced with retroviral GFP-LXRα fusion vectors. As shown in Fig. 4C, expression of LXRα1 strongly stimulated expression of ABCA1 mRNA. Consistent with their behavior in transient transfection assays, LXRα2 showed reduced activity, whereas LXRα3 actually reduced ABCA1 expression. Thus, LXRα2 and LXRα3 display altered transcriptional activity on the endogenous ABCA1 promoter as well as in transient transfection reporter assays.The reduced activity of LXRα2 compared with LXRα1 suggests an unexpected function for the LXRα N terminus in transcriptional regulation. Studies on other nuclear receptors have shown that the N terminus can function to augment (e.g., RXRα, Ref. 28 and estrogen receptor, Ref. 29) or inhibit (e.g., PPARγ) transcriptional activity (30Shao D. Rangwala S.M. Bailey S.T. Krakow S.L. Reginato M.J. Lazar M.A. Interdomain communication regulating ligand binding by PPAR-gamma.Nature. 1998; 396: 377-380Google Scholar). However, the ability of the N terminus of LXRα to contribute to overall receptor activity has not been explored previously. To address the role of the LXR N terminus in more detail, we constructed serial deletions. As shown in Fig. 5, transfection of the deletion constructs into HEK-293 cells revealed that the N-terminal 20 amino acids are required for full receptor activity. Furthermore, activity declined further with the deletion of the N-terminal 45 amino acids. This observation suggests that sequences between amino acids 5 and 45 are important for receptor function. Similar results were obtained when GW3965 or T1317 was used as the LXR ligand (data not shown).Fig. 5The N-terminal domain (ligand-independent transcriptional activation function [AF1]) is essential for the full transcriptional activity of LXRα1. Serial deletions of the N-terminal AF1 domain of human LXRα were cloned into pCMX expression vectors and tested for activity in transient transfection assays. Constructs are named by the number of amino acids deleted from the N-terminus of LXRα1. They are shown as Δ5, Δ13, Δ20, and Δ45 (LXRα2), respectively. After transfection, cells were treated with DMSO or GW3965 (synthetic LXR agonist, 1 μM) for 24 h. Each point is the average of triplicate experiments. * P <

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