Data access for the 1,000 Plants (1KP) project
2014; University of Oxford; Volume: 3; Issue: 1 Linguagem: Inglês
10.1186/2047-217x-3-17
ISSN2047-217X
AutoresNaim Matasci, Ling-Hong Hung, Zhixiang Yan, Eric Carpenter, Norman J. Wickett, Siavash Mirarab, Nam Nguyen, Tandy Warnow, Saravanaraj Ayyampalayam, Michael S. Barker, J. Gordon Burleigh, Matthew A. Gitzendanner, Eric Wafula, Joshua P. Der, Claude W. dePamphilis, Béatrice Roure, Hervé Philippe, Brad R. Ruhfel, Nicholas W. Miles, Sean W. Graham, Sarah Mathews, Barbara Surek, Michael Melkonian, Pamela S. Soltis, Pamela S. Soltis, Carl J. Rothfels, Lisa Pokorny, Jonathan Shaw, Lisa DeGironimo, Dennis Wm. Stevenson, Juan Carlos Villarreal, Tao Chen, Toni M. Kutchan, Megan Rolf, Regina S. Baucom, Michael K. Deyholos, Ram Samudrala, Zhijian Tian, Xiaolei Wu, Xiao Sun, Yong Zhang, Jun Wang, Jim Leebens‐Mack, Gane Ka‐Shu Wong,
Tópico(s)Genetic Mapping and Diversity in Plants and Animals
ResumoThe 1,000 plants (1KP) project is an international multi-disciplinary consortium that has generated transcriptome data from over 1,000 plant species, with exemplars for all of the major lineages across the Viridiplantae (green plants) clade. Here, we describe how to access the data used in a phylogenomics analysis of the first 85 species, and how to visualize our gene and species trees. Users can develop computational pipelines to analyse these data, in conjunction with data of their own that they can upload. Computationally estimated protein-protein interactions and biochemical pathways can be visualized at another site. Finally, we comment on our future plans and how they fit within this scalable system for the dissemination, visualization, and analysis of large multi-species data sets.
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