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General properties and phylogenetic utilities of nuclear ribosomal DNA and mitochondrial DNA commonly used in molecular systematics

1999; Korean Society for Parasitology; Volume: 37; Issue: 4 Linguagem: Inglês

10.3347/kjp.1999.37.4.215

1738-0006

Ui-Wook Hwang, Won Bae Kim,

Identification and Quantification in Food

To choose one or more appropriate molecular markers or gene regions for resolving a particular systematic question among the organisms at a certain categorical level is still a very difficult process. The primary goal of this review, therefore, is to provide a theoretical information in choosing one or more molecular markers or gene regions by illustrating general properties and phylogenetic utilities of nuclear ribosomal DNA (rDNA) and mitochondrial DNA (mtDNA) that have been most commonly used for phylogenetic researches. The highly conserved molecular markers and/or gene regions are useful for investigating phylogenetic relationships at higher categorical levels (deep branches of evolutionary history). On the other hand, the hypervariable molecular markers and/or gene regions are useful for elucidating phylogenetic relationships at lower categorical levels (recently diverged branches). In summary, different selective forces have led to the evolution of various molecular markers or gene regions with varying degrees of sequence conservation. Thus, appropriate molecular markers or gene regions should be chosen with even greater caution to deduce true phylogenetic relationships over a broad taxonomic spectrum. Key words: molecular marker, taxonomic rank, ribosomal DNA (rDNA), mitochondrial DNA (mtDNA), mtDNA gene arrangement, molecular systematics, molecular evolution, secondary structure, Arthropoda