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BIBTEX RIS

TopiaryExplorer: visualizing large phylogenetic trees with environmental metadata

2011; Oxford University Press; Volume: 27; Issue: 21 Linguagem: Inglês

10.1093/bioinformatics/btr517

ISSN

1367-4811

Autores

Meg Pirrung, Ryan Kennedy, J. Gregory Caporaso, Jesse Stombaugh, Doug Wendel, Rob Knight,

Tópico(s)

Genomics and Phylogenetic Studies

Resumo

Abstract Motivation: Microbial community profiling is a highly active area of research, but tools that facilitate visualization of phylogenetic trees and associated environmental data have not kept up with the increasing quantity of data generated in these studies. Results: TopiaryExplorer supports the visualization of very large phylogenetic trees, including features such as the automated coloring of branches by environmental data, manipulation of trees and incorporation of per-tip metadata (e.g. taxonomic labels). Availability: http://topiaryexplorer.sourceforge.net Contact: rob.knight@colorado.edu

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