Influence of arthropod sampling solutions on insect genotyping reliability
2010; Wiley; Volume: 135; Issue: 2 Linguagem: Inglês
10.1111/j.1570-7458.2010.00977.x
ISSN1570-7458
AutoresBernhard C. Stoeckle, Kai Dworschak, Martin M. Goßner, Ralph Kuehn,
Tópico(s)Plant and animal studies
ResumoEntomologia Experimentalis et ApplicataVolume 135, Issue 2 p. 217-223 Influence of arthropod sampling solutions on insect genotyping reliability Bernhard C. Stoeckle, Bernhard C. Stoeckle Unit of Molecular Zoology, Department of Animal Science, Technische Universität München, Am Hochanger 13, 85354 Freising, GermanySearch for more papers by this authorKai Dworschak, Kai Dworschak Animal Ecology, Department of Ecology & Ecosystem Management, Technische Universität München, Hans-Carl-von-Carlowitz-Platz 2, 85354 Freising, GermanySearch for more papers by this authorMartin M. Gossner, Martin M. Gossner Institute of Ecology, Friedrich-Schiller University, Dornburger Str. 159, 07743 Jena, GermanySearch for more papers by this authorRalph Kuehn, Corresponding Author Ralph Kuehn Unit of Molecular Zoology, Department of Animal Science, Technische Universität München, Am Hochanger 13, 85354 Freising, Germany *Ralph Kuehn, Unit of Molecular Zoology, Department of Animal Science, Technische Universität München, Am Hochanger 13, 85354 Freising, Germany. E-mail: [email protected]Search for more papers by this author Bernhard C. Stoeckle, Bernhard C. Stoeckle Unit of Molecular Zoology, Department of Animal Science, Technische Universität München, Am Hochanger 13, 85354 Freising, GermanySearch for more papers by this authorKai Dworschak, Kai Dworschak Animal Ecology, Department of Ecology & Ecosystem Management, Technische Universität München, Hans-Carl-von-Carlowitz-Platz 2, 85354 Freising, GermanySearch for more papers by this authorMartin M. Gossner, Martin M. Gossner Institute of Ecology, Friedrich-Schiller University, Dornburger Str. 159, 07743 Jena, GermanySearch for more papers by this authorRalph Kuehn, Corresponding Author Ralph Kuehn Unit of Molecular Zoology, Department of Animal Science, Technische Universität München, Am Hochanger 13, 85354 Freising, Germany *Ralph Kuehn, Unit of Molecular Zoology, Department of Animal Science, Technische Universität München, Am Hochanger 13, 85354 Freising, Germany. E-mail: [email protected]Search for more papers by this author First published: 06 April 2010 https://doi.org/10.1111/j.1570-7458.2010.00977.xCitations: 16Read the full textAboutPDF ToolsRequest permissionExport citationAdd to favoritesTrack citation ShareShare Give accessShare full text accessShare full-text accessPlease review our Terms and Conditions of Use and check box below to share full-text version of article.I have read and accept the Wiley Online Library Terms and Conditions of UseShareable LinkUse the link below to share a full-text version of this article with your friends and colleagues. Learn more.Copy URL References Bisanti M, Ganassi S & Mandrioli M (2009) Comparative analysis of various fixative solutions on insect preservation for molecular studies. Entomologia Experimentalis et Applicata 130: 290– 296. Broquet T & Petit E (2004) Quantifying genotyping errors in noninvasive population genetics. Molecular Ecology 13: 3601– 3608. Carvalho AOR & Vieira LGE (2000) Comparison of preservation methods of Atta spp. (Hymenoptera: Formicidae) for RAPD analysis. Anais da Sociedade Entomológica do Brasil 29: 489– 496. Castillo RIC & Núñez-Farfán J (2008) The evolution of sexual size dimorphism: the interplay between natural and sexual selection. Journal of Orthoptera Research 17: 197– 200. Châline N, Ratnieks FLW, Raine NE, Badcock NS & Burke T (2004) Non-lethal sampling of honey bee, Apis mellifera, DNA using wing tips. Apidologie 35: 311– 318. Dean MD & Ballard JWO (2001) Factors affecting mitochondrial DNA quality from museum preserved Drosophila simulans. Entomologia Experimentalis et Applicata 98: 279– 283. Dillon N, Austin AD & Bartowsky E (1996) Comparison of preservation techniques for DNA extraction from hymenopterous insects. Insect Molecular Biology 5: 21– 24. Engel K & Ammer U (2003) Vergleich verschiedener Fanglösungen. Faunistisch-ökologische Mitteilungen 8: 297– 301. Fernando P, Vidya TN, Rajapakse C, Dangolla A & Melnick DJ (2003) Reliable noninvasive genotyping: fantasy or reality? Journal of Heredity 94: 115– 123. Goossens B, Waits LP & Taberlet P (1998) Plucked hair samples as a source of DNA: reliability of dinucleotide microsatellite genotyping. Molecular Ecology 7: 1237– 1241. Gossner M & Ammer U (2006) The effects of Douglas-fir on tree-specific arthropod communities in mixed species stands with European beech and Norway spruce. European Journal of Forest Research 125: 221– 235. Gurdebeke S & Maelfait JP (2002) Pitfall trapping in population genetics studies: finding the right “solution”. Journal of Arachnology 30: 255– 261. Hausknecht R, Salzer K, Filli F & Kuehn R (2009) Techniques for noninvasive genetic monitoring of Alpine Ibex (Capra ibex). Acta Theriologica 54: 277– 287. Hebert PDN, Ratnasingham S & DeWaard JR (2003) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society of London B 270: 96– 99. Heydemann B (1956) Über die Bedeutung der Formalinfallen für die zoologische Landesforschung. Faunistische Mitteilungen Norddeutschlands 1: 19– 24. Hogan BLM, Costantini F & Lacy E (1986) Manipulating the Mouse Embryo. A Laboratory Manual. Cold Spring Harbor Laboratory Press, Woodbury, NY, USA. Hollander M & Wolfe DA (1999) Nonparametric Statistical Methods, 2nd edn. John Wiley & Sons, New York, NY, USA. Hothorn T, Hornik K, Van De Wiel MA & Zeileis A (2009) Package ‘coin’: conditional inference procedures in a permutation test framework. Available from: http://cran.r-project.org Isono M (2005) Three approaches for cost-effective sampling of carabid beetles. Japanese Journal of Entomology 8: 1– 13. Jud P & Schmidt-Entling MH (2008) Fluid type, dilution, and bitter agent influence spider preservation in pitfall traps. Entomologia Experimentalis et Applicata 129: 356– 359. King JR & Porter SD (2004) Recommendations on the use of alcohols for preservation of ant specimens (Hymenoptera, Formicidae). Insectes Sociaux 51: 197– 202. Koch DA, Duncan GA, Parsons TJ, Pruess KP & Powers TO (1998) Effects of preservation methods, parasites, and gut contents of black flies (Diptera: Simuliidae) on polymerase chain reaction products. Journal of Medical Entomology 35: 314– 318. Lushai G, Fjellsted W, Marcovitch O, Aagaard K, Sherratt TN et al. (2000) Application of molecular techniques to non-lethal tissue samples of endangered butterfly populations (Parnassius apollo L.) in Norway for conservation management. Conservation Biology 94: 43– 50. Mandrioli M, Borsatti F & Mola L (2006) Factors affecting DNA preservation from museum-collected lepidopteran specimens. Entomologia Experimentalis et Applicata 120: 239– 244. Martikainen P, Kouki J & Heikkala O (2006) The effects of green tree retention and subsequent prescribed burning on ground beetles (Coleoptera: Carabidae) in boreal pine-dominated forests. Ecography 29: 659– 670. Miquel C, Bellemain E, Poillot C, Bessière J, Durand A & Taberlet P (2006) Quality indexes to assess the reliability of genotypes in studies using noninvasive sampling and multiple-tube approach. Molecular Ecology Notes 6: 985– 988. Mtambo J, Van Bortel W, Madder M, Roelants P & Backeljau T (2006) Comparison of preservation methods of Rhipicephalus appendiculatus (Acari: Ixodidae) for reliable DNA amplification by PCR. Entomologia Experimentalis et Applicata 38: 189– 199. Mühlenberg M (1993) Freilandökologie. Quelle & Meyer, Heidelberg, Germany. Müller J & Gossner M (2007) Single host trees in a closed forest canopy matrix: a highly fragmented landscape? Journal of Applied Entomology 131: 613– 620. Pompanon F, Bonin A, Bellemain E & Taberlet P (2005) Genotyping errors: causes, consequences and solutions. Nature Reviews Genetics 6: 847– 859. Post RJ, Flook PK & Millest AL (1993) Methods for the preservation of insects for DNA studies. Biochemical Systematics and Ecology 21: 85– 92. Ratnasingham S & Hebert PD (2007) BOLD: The Barcode of Life Data System (http://www.barcodinglife.org). Molecular Ecology Notes 7: 355– 364. Regier JC, Shultz JW, Ganley ARD, Hussey A, Shi D et al. (2008) Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. Systematic Biology 57: 920– 938. Reiss RA (2006) Ancient DNA from ice age insects: proceed with caution. Quaternary Science Reviews 25: 1877– 1893. Reiss RA, Schwert DP & Ashworth AC (1995) Field preservation of Coleoptera for molecular-genetic analyses. Environmental Entomology 24: 716– 719. Renner K (1982) Coleopterenfänge mit Bodenfallen am Sandstrand der Ostseeküste, ein Beitrag zum Problem der Lockwirkung mit Konservierungsmitteln. Faunistisch-Ökologische Mitteilungen 5: 137– 146. Rose OC, Brookes MI & Mallet JLB (1994) A quick and simple nonlethal method for extracting DNA from butterfly wings. Molecular Ecology Notes 3: 275. Sallé A, Kerdelhué C, Breton M & Lieutier F (2003) Characterization of microsatellite loci in the spruce bark beetle Ips typographus (Coleoptera: Scolytinae). Molecular Ecology Notes 3: 336– 337. Sasakawa K (2007) Effects of pitfall trap preservatives on specimen condition in carabid beetles. Entomologia Experimentalis et Applicata 125: 321– 324. Schlötterer C (2004) The evolution of molecular markers – just a matter of fashion? Nature Reviews Genetics 5: 63– 69. Schmidt MH, Clough Y, Schulz W, Westphalen A & Tscharntke T (2006) Capture efficiency and preservation attributes of different fluids in pitfall traps. Journal of Arachnology 34: 159– 162. Sobek S, Gossner MM, Scherber C, Steffan-Dewenter I & Tscharntke T (2009) Tree diversity drives abundance and spatiotemporal diversity of true bugs (Heteroptera). Ecological Entomology 34: 772– 782. Stammer HJ (1949) Die Bedeutung der Aethylenglykolfallen für tierökologische und phänologische Untersuchungen. Verhandlungen der Deutschen Zoologischen Gesellschaft 1948: 387– 391. Taberlet P, Waits LP & Luikart G (1999) Noninvasive genetic sampling: look before you leap. Trends in Ecology and Evolution 14: 323– 327. Tayutivutikul J, Pongprasert W, Royce LA & Ruangrit K (2003) Comparison of preservation techniques for silkworm (Bombyx mori L.) DNA based on polymerase chain reaction (PCR) products. Chiang Mai University Journal 2: 107– 114. Teichmann B (1994) Eine wenig bekannte Konservierungsflüßigkeit für Bodenfallen. Entomologische Nachrichten und Berichte 38: 25– 30. Vila M, Auger-Rozenberg MA, Goussard F & Lopez-Vaamonde C (2009) Effect of non-lethal sampling on life-history traits of the protected moth Graellsia isabelae (Lepidoptera: Saturniidae). Ecological Entomology 34: 356– 362. Watts PC, Thompson DJ, Allen KA & Kemp SJ (2007) How useful is DNA extracted from the legs of archived insects for microsatellite-based population genetic analyses? Journal of Insect Conservation 11: 195– 198. Citing Literature Volume135, Issue2May 2010Pages 217-223 ReferencesRelatedInformation
Referência(s)