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Comparative visualization of genetic and physical maps with Strudel

2011; Oxford University Press; Volume: 27; Issue: 9 Linguagem: Inglês

10.1093/bioinformatics/btr111

1367-4811

Micha Bayer, Iain Milne, Gordon Stephen, Paul D. Shaw, Linda Cardle, Frank Wright, David Marshall,

Genetic Mapping and Diversity in Plants and Animals

Abstract Summary: Data visualization can play a key role in comparative genomics, for example, underpinning the investigation of conserved synteny patterns. Strudel is a desktop application that allows users to easily compare both genetic and physical maps interactively and efficiently. It can handle large datasets from several genomes simultaneously, and allows all-by-all comparisons between these. Availability and implementation: Installers for Strudel are available for Windows, Linux, Solaris and Mac OS X at http://bioinf.scri.ac.uk/strudel/. Contact: strudel@scri.ac.uk; micha.bayer@scri.ac.uk