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Comprehensive analysis via exome sequencing uncovers genetic etiology in autosomal recessive nonsyndromic deafness in a large multiethnic cohort

2015; Elsevier BV; Volume: 18; Issue: 4 Linguagem: Inglês

10.1038/gim.2015.89

1530-0366

Güney Bademci, Joseph Foster, Nejat Mahdieh, Mortaza Bonyadi, Duygu Duman, Filiz Başak Cengiz, Ibis Menéndez, Oscar Diaz‐Horta, Atefeh Shirkavand, Sirous Zeinali, Aslı Subaşıoğlu, Suna Tokgöz-Yılmaz, Fabiola Huesca-Hernández, María de la Luz Arenas‐Sordo, Juan Domínguez-Aburto, Edgar Hernández‐Zamora, Paola Montenegro, Rosario Paredes, Germania Moreta, Rodrigo Vinueza, Franklin Villegas, Santiago Mendoza-Benitez, Shengru Guo, Nazım Bozan, Tülay Tos, Armağan İncesulu, Gonca Sennaroğlu, Susan H. Blanton, Hatice Akay, Muzeyyen Yildirim‐Baylan, Mustafa Tekin,

Vestibular and auditory disorders

PurposeAutosomal recessive nonsyndromic deafness (ARNSD) is characterized by a high degree of genetic heterogeneity, with reported mutations in 58 different genes. This study was designed to detect deafness-causing variants in a multiethnic cohort with ARNSD by using whole-exome sequencing (WES).MethodsAfter excluding mutations in the most common gene, GJB2, we performed WES in 160 multiplex families with ARNSD from Turkey, Iran, Mexico, Ecuador, and Puerto Rico to screen for mutations in all known ARNSD genes.ResultsWe detected ARNSD-causing variants in 90 (56%) families, 54% of which had not been previously reported. Identified mutations were located in 31 known ARNSD genes. The most common genes with mutations were MYO15A (13%), MYO7A (11%), SLC26A4 (10%), TMPRSS3 (9%), TMC1 (8%), ILDR1 (6%), and CDH23 (4%). Nine mutations were detected in multiple families with shared haplotypes, suggesting founder effects.ConclusionWe report on a large multiethnic cohort with ARNSD in which comprehensive analysis of all known ARNSD genes identifies causative DNA variants in 56% of the families. In the remaining families, WES allows us to search for causative variants in novel genes, thus improving our ability to explain the underlying etiology in more families.