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BioNetGen 2.2: advances in rule-based modeling

2016; Oxford University Press; Volume: 32; Issue: 21 Linguagem: Inglês

10.1093/bioinformatics/btw469

ISSN

1367-4811

Autores

Leonard A. Harris, Justin Hogg, José-Juan Tapia, John A. P. Sekar, Sanjana Gupta, Ilya Korsunsky, Arshi Arora, Dipak Barua, Robert P. Sheehan, James R. Faeder,

Tópico(s)

Bioinformatics and Genomic Networks

Resumo

: BioNetGen is an open-source software package for rule-based modeling of complex biochemical systems. Version 2.2 of the software introduces numerous new features for both model specification and simulation. Here, we report on these additions, discussing how they facilitate the construction, simulation and analysis of larger and more complex models than previously possible.Stable BioNetGen releases (Linux, Mac OS/X and Windows), with documentation, are available at http://bionetgen.org Source code is available at http://github.com/RuleWorld/bionetgen CONTACT: bionetgen.help@gmail.comSupplementary information: Supplementary data are available at Bioinformatics online.

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