First Report of Grapevine red blotch-associated virus on Grapevine in Korea
2016; American Phytopathological Society; Volume: 100; Issue: 9 Linguagem: Inglês
10.1094/pdis-03-16-0283-pdn
ISSN1943-7692
AutoresSeungmo Lim, Davaajargal Igori, Fei Zhao, Jae Sun Moon, I.-S. Cho, Gug-Seoun Choi,
Tópico(s)Insect-Plant Interactions and Control
ResumoHomePlant DiseaseVol. 100, No. 9First Report of Grapevine red blotch-associated virus on Grapevine in Korea PreviousNext DISEASE NOTES OPENOpen Access licenseFirst Report of Grapevine red blotch-associated virus on Grapevine in KoreaS. Lim, D. Igori, F. Zhao, J. S. Moon, I.-S. Cho, and G.-S. ChoiS. Lim, D. Igori, F. Zhao, J. S. Moon, I.-S. Cho, and G.-S. ChoiAffiliationsAuthors and Affiliations S. Lim D. Igori F. Zhao J. S. Moon , Molecular Biofarming Research Center, Korea Research Institute of Bioscience and Biotechnology, Daejeon 34141, Korea, and Biosystems and Bioengineering Program, University of Science and Technology (UST), Daejeon 34113, Korea I.-S. Cho G.-S. Choi , Horticultural & Herbal Crop Environment Division, National Institute of Horticultural & Herbal Science, RDA, Wanju 55365, Korea. Published Online:14 Jul 2016https://doi.org/10.1094/PDIS-03-16-0283-PDNAboutSections ToolsAdd to favoritesDownload CitationsTrack Citations ShareShare onFacebookTwitterLinked InRedditEmailWechat Grapevine red blotch-associated virus (GRBaV) is a recently identified virus that is proposed to be a member of the family Geminiviridae. The virus is associated with red blotch disease of grapevines (Vitis vinifera) (Al Rwahnih et al. 2013). A survey of the prevalence of GRBaV on grapevines showed that the virus is widespread across the United States (Krenz et al. 2014). Some grapevine viruses, including Blueberry leaf mottle virus, Grapevine fleck virus, Grapevine leafroll-associated virus 1 (GLRaV-1) and GLRaV-3, and Grapevine pinot gris virus, have been identified in Korea (Kwak et al. 2016), but GRBaV has not yet been reported. In July 2014, 25 grapevine samples exhibiting foliar symptoms of mottling, yellowing, reddening, and malformation, and five grapevine samples having no visible symptoms were collected in Suwon and Gyeongsan, Korea, respectively. For high-throughput RNA sequencing-based detection of viruses, all samples were mixed into one pool from which total RNA was extracted with TRI Reagent (Molecular Research Center, Cincinnati, OH). Virus-like sequences were analyzed and assembled from the grapevine transcriptome that was produced by Illumina HiSeq2500 at the Theragen Bio Institute (Suwon, Korea) using SG-VIPdb by SeqGenesis (Daejeon, Korea), as described by Lim et al. (2015). Out of a total of 858,046,460 reads produced from RNA sequencing, 8,043 reads corresponding to GRBaV were obtained and, consequently, the full-length circular genomic sequence of GRBaV was identified. To confirm the RNA sequencing result and find how many grapevine samples were infected with GRBaV, total DNA, which was extracted with the DNeasy Plant Mini Kit (Qiagen, Hilden, Germany), and one pair of primers (5′-GCTGTGGTGCTCATTTCTCT-3′ and 5′-ACTTGATCATACACACGCCA-3′) were used to amplify DNA fragments of 1,216 bp by PCR using AccuPower ProFi Taq PCR PreMix (Bioneer, Daejeon, Korea). Two white-berried grapevine samples, which showed foliar symptoms of mottling or yellowing, tested positive for GRBaV by PCR. Since the symptoms observed on infected vines were not indicative of the presence of GRBaV, diagnostic primers GVGF1 and GVGR1 (Al Rwahnih et al. 2013) were used in another PCR. Results were consistent with those from the first PCR. To determine the complete genome sequence of GRBaV detected in one of the positive samples, two additional pairs of primers (5′-CTTCTGCAAGTGGACATACG-3′ and 5′-CGTCCTCAATCTACAACGAC-3′; 5′-ACCCAGAGATGAATTTCTGG-3′ and 5′-TCACTAGAACTGCAGGAATC-3′) were designed. Assembly of three sequenced PCR products covering the entire virus genome showed that Korean GRBaV isolate SW6 is 3,207 nt in length (GenBank Accession No. KU821056). The genome of isolate SW6 shared high nucleotide sequence identity with GRBaV isolates (93 to 99%) and showed the highest identity with isolate CS337-1 (KC896624). To the best of our knowledge, this is the first report of GRBaV, an increasingly important emerging viral pathogen in the United States (Sudarshana et al. 2015), on grapevine (V. vinifera) in Korea.References:Al Rwahnih, M., et al. 2013. Phytopathology 103:1069. https://doi.org/10.1094/PHYTO-10-12-0253-R Link, ISI, Google ScholarKrenz, B., et al. 2014. Phytopathology 104:1232. https://doi.org/10.1094/PHYTO-02-14-0053-R Link, ISI, Google ScholarKwak, H.-R., et al. 2016. Plant Dis. 100:232. https://doi.org/10.1094/PDIS-05-15-0517-PDN Link, ISI, Google ScholarLim, S., et al. 2015. Arch. Virol. 160:3153. https://doi.org/10.1007/s00705-015-2616-7 Crossref, ISI, Google ScholarSudarshana, M. R., et al. 2015. Phytopathology 105:1026. https://doi.org/10.1094/PHYTO-12-14-0369-FI Link, ISI, Google ScholarDetailsFiguresLiterature CitedRelated Vol. 100, No. 9 September 2016SubscribeISSN:0191-2917e-ISSN:1943-7692 Metrics Article History Issue Date: 22 Aug 2016Published: 14 Jul 2016First Look: 2 May 2016Accepted: 27 Apr 2016 Pages: 1957-1957 Information© 2016 The American Phytopathological SocietyCited byMolecular characterization of divergent isolates of grapevine red blotch virus from Blanc du Soleil, an interspecific hybrid white grapevine cultivarAshrafou Ouro-Djobo, Kristian Stevens, Justin J. Scheiner, Violeta M. Tsolova, Frances M. 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