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Expanding the UniFrac Toolbox

2016; Public Library of Science; Volume: 11; Issue: 9 Linguagem: Inglês

10.1371/journal.pone.0161196

1932-6203

Ruth G. Wong, Jia Wu, Gregory B. Gloor,

Bioinformatics and Genomic Networks

The UniFrac distance metric is often used to separate groups in microbiome analysis, but requires a constant sequencing depth to work properly. Here we demonstrate that unweighted UniFrac is highly sensitive to rarefaction instance and to sequencing depth in uniform data sets with no clear structure or separation between groups. We show that this arises because of subcompositional effects. We introduce information UniFrac and ratio UniFrac, two new weightings that are not as sensitive to rarefaction and allow greater separation of outliers than classic unweighted and weighted UniFrac. With this expansion of the UniFrac toolbox, we hope to empower researchers to extract more varied information from their data.