Pathway Inspector: a pathway based web application for RNAseq analysis of model and non-model organisms
2016; Oxford University Press; Volume: 33; Issue: 3 Linguagem: Inglês
10.1093/bioinformatics/btw636
ISSN1367-4811
AutoresLuca Bianco, Samantha Riccadonna, Enrico Lavezzo, Marco Falda, Elide Formentin, Duccio Cavalieri, Stefano Toppo, Paolo Fontana,
Tópico(s)RNA modifications and cancer
ResumoPathway Inspector is an easy-to-use web application helping researchers to find patterns of expression in complex RNAseq experiments. The tool combines two standard approaches for RNAseq analysis: the identification of differentially expressed genes and a topology-based analysis of enriched pathways. Pathway Inspector is equipped with ad hoc interactive graphical interfaces simplifying the discovery of modulated pathways and the integration of the differentially expressed genes in the corresponding pathway topology.Pathway Inspector is available at the website http://admiral.fmach.it/PI and has been developed in Python, making use of the Django Web Framework.Contact:paolo.fontana@fmach.it
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