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Assimilating Text-Mining & Bio-Informatics Tools to Analyze Cellulase structures

2017; IOP Publishing; Volume: 225; Linguagem: Inglês

10.1088/1757-899x/225/1/012162

1757-899X

K P N V Satya Sree, Bandana Kumari, K. Syamala Devi, S.M. Roy Choudri, Kushal Joshi,

Biomedical Text Mining and Ontologies

Text-mining is one of the best potential way of automatically extracting information from the huge biological literature. To exploit its prospective, the knowledge encrypted in the text should be converted to some semantic representation such as entities and relations, which could be analyzed by machines. But large-scale practical systems for this purpose are rare. But text mining could be helpful for generating or validating predictions. Cellulases have abundant applications in various industries. Cellulose degrading enzymes are cellulases and the same producing bacteria – Bacillus subtilis & fungus Pseudomonas putida were isolated from top soil of Guntur Dt. A.P. India. Absolute cultures were conserved on potato dextrose agar medium for molecular studies. In this paper, we presented how well the text mining concepts can be used to analyze cellulase producing bacteria and fungi, their comparative structures are also studied with the aid of well-establised, high quality standard bioinformatic tools such as Bioedit, Swissport, Protparam, EMBOSSwin with which a complete data on Cellulases like structure, constituents of the enzyme has been obtained.