bioSyntax: syntax highlighting for computational biology
2018; BioMed Central; Volume: 19; Issue: 1 Linguagem: Inglês
10.1186/s12859-018-2315-y
ISSN1471-2105
AutoresArtem Babaian, Anicet Ebou, Alyssa Fegen, Jeffrey Kam, Gherman Novakovsky, Jasper Wong, Dylan Aïssi, Yao Li,
Tópico(s)Biomedical Text Mining and Ontologies
ResumoComputational biology requires the reading and comprehension of biological data files. Plain-text formats such as SAM, VCF, GTF, PDB and FASTA, often contain critical information which is obfuscated by the data structure complexity. bioSyntax ( https://biosyntax.org/ ) is a freely available suite of biological syntax highlighting packages for vim, gedit, Sublime, VSCode, and less. bioSyntax improves the legibility of low-level biological data in the bioinformatics workspace. bioSyntax supports computational scientists in parsing and comprehending their data efficiently and thus can accelerate research output.
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