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The UCSC Genome Browser database: 2018 update

2017; Oxford University Press; Volume: 46; Issue: D1 Linguagem: Inglês

10.1093/nar/gkx1020

1362-4962

Jonathan D. Casper, Ann S. Zweig, Chris Villarreal, Cath Tyner, Matthew L Speir, Kate R. Rosenbloom, Brian J. Raney, Christopher M Lee, Brian T. Lee, Donna Karolchik, Angie S. Hinrichs, Maximilian Haeussler, Luvina Guruvadoo, Jairo Navarro Gonzalez, David Gibson, Ian T. Fiddes, Christopher Eisenhart, Mark Diekhans, Hiram Clawson, Galt P Barber, Joel Armstrong, David Haussler, Robert M. Kuhn, W. James Kent,

Microbial Community Ecology and Physiology

The UCSC Genome Browser (https://genome.ucsc.edu) provides a web interface for exploring annotated genome assemblies. The assemblies and annotation tracks are updated on an ongoing basis-12 assemblies and more than 28 tracks were added in the past year. Two recent additions are a display of CRISPR/Cas9 guide sequences and an interactive navigator for gene interactions. Other upgrades from the past year include a command-line version of the Variant Annotation Integrator, support for Human Genome Variation Society variant nomenclature input and output, and a revised highlighting tool that now supports multiple simultaneous regions and colors.