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Bayesian phylogenetic and phylodynamic data integration using BEAST 1.10

2018; University of Oxford; Volume: 4; Issue: 1 Linguagem: Inglês

10.1093/ve/vey016

2057-1577

Marc A. Suchard, Philippe Lemey, Guy Baele, Daniel L. Ayres, Alexei J. Drummond, Andrew Rambaut,

Genomics and Phylogenetic Studies

The Bayesian Evolutionary Analysis by Sampling Trees (BEAST) software package has become a primary tool for Bayesian phylogenetic and phylodynamic inference from genetic sequence data. BEAST unifies molecular phylogenetic reconstruction with complex discrete and continuous trait evolution, divergence-time dating, and coalescent demographic models in an efficient statistical inference engine using Markov chain Monte Carlo integration. A convenient, cross-platform, graphical user interface allows the flexible construction of complex evolutionary analyses.