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The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

2019; Cold Spring Harbor Laboratory Press; Volume: 30; Issue: 1 Linguagem: Inglês

10.1101/gr.251678.119

1549-5469

Zhemin Zhou, Nabil-Fareed Alikhan, Khaled Mohamed, Yulei Fan, Mark Achtman,

Vibrio bacteria research studies

EnteroBase is an integrated software environment that supports the identification of global population structures within several bacterial genera that include pathogens. Here, we provide an overview of how EnteroBase works, what it can do, and its future prospects. EnteroBase has currently assembled more than 300,000 genomes from Illumina short reads from