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minoTour, real-time monitoring and analysis for nanopore sequencers

2021; Oxford University Press; Volume: 38; Issue: 4 Linguagem: Inglês

10.1093/bioinformatics/btab780

ISSN

1367-4811

Autores

Rory Munro, Roberto Santos, Alexander Payne, Teri Forey, Solomon Osei, Nadine Holmes, Matthew Loose,

Tópico(s)

Computational Physics and Python Applications

Resumo

minoTour offers a Laboratory Informations Management System (LIMS) system for Oxford Nanopore Technology sequencers, with real-time metrics and analysis available permanently for review. Integration of unique real-time automated analysis can reduce the time required to answer biological questions, including mapping and classification of sequence while a run is in progress. Real-time sequence data require new methods of analysis which do not wait for the completion of a run and minoTour provides a framework to allow users to exploit these features.Source code and documentation are available at https://github.com/LooseLab/minotourcli and https://github.com/LooseLab/minotourapp. Docker images are available from https://hub.docker.com/r/adoni5/, and can be installed using a preconfigured docker-compose script at https://github.com/LooseLab/minotour-docker. An example server is available at http://137.44.59.170.Supplementary data are available at Bioinformatics online.

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