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ColabFold - Making protein folding accessible to all

2021; Cold Spring Harbor Laboratory; Linguagem: Inglês

10.1101/2021.08.15.456425

Milot Mirdita, Konstantin Schütze, Yoshitaka Moriwaki, Lim Heo, Sergey Ovchinnikov, Martin Steinegger,

Protein Structure and Dynamics

ColabFold offers accelerated protein structure and complex predictions by combining the fast homology search of MMseqs2 with AlphaFold2 or RoseTTAFold. ColabFold’s 40 - 60× faster search and optimized model use allows predicting close to a thousand structures per day on a server with one GPU. Coupled with Google Colaboratory, ColabFold becomes a free and accessible platform for protein folding. ColabFold is open-source software available at github.com/sokrypton/ColabFold . Its novel environmental databases are available at colabfold.mmseqs.com Contact milot.mirdita@mpibpc.mpg.de , so@fas.harvard.edu , martin.steinegger@snu.ac.kr