The potential and challenges of nanopore sequencing
2009; Springer Nature; Linguagem: Inglês
10.1142/9789814287005_0027
ISSN2197-7127
AutoresDaniel Branton, David W. Deamer, Andre Marziali, Hagan Bayley, Steven A. Benner, Thomas Bütler, Massimiliano Di Ventra, Slaven Garaj, Andrew Hibbs, Xiaohua Huang, Stevan Jovanovich, Predrag Krstić, Stuart Lindsay, Xinsheng Ling, Carlos H. Mastrangelo, A. MELLER, John S. Oliver, Yuriy V. Pershin, J. Michael Ramsey, Robert Riehn, Gautam V. Soni, Vincent Tabard‐Cossa, Meni Wanunu, Matthew Wiggin, Jeffery A. Schloss,
Tópico(s)Genomics and Phylogenetic Studies
ResumoNanoscience and Technology, pp. 261-268 (2009) No AccessThe potential and challenges of nanopore sequencingDaniel Branton, David W Deamer, Andre Marziali, Hagan Bayley, Steven A Benner, Thomas Butler, Massimiliano Di Ventra, Slaven Garaj, Andrew Hibbs, Xiaohua Huang, Stevan B Jovanovich, Predrag S Krstic, Stuart Lindsay, Xinsheng Sean Ling, Carlos H Mastrangelo, Amit Meller, John S Oliver, Yuriy V Pershin, J Michael Ramsey, Robert Riehn, Gautam V Soni, Vincent Tabard- Cossa, Meni Wanunu, Matthew Wiggin, and Jeffery A SchlossDaniel BrantonDepartment of Molecular and Cell Biology, Harvard University, Cambridge, Massachusetts 02138, USACorrespondence should be addressed to D.B., David W DeamerDepartment of Chemistry and Biochemistry, University of California, Santa Cruz, California 95064, USA, Andre MarzialiDepartment of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada, Hagan BayleyDepartment of Chemical Biology, Oxford University, Oxford OX1 3TA, UK, Steven A BennerFoundation for Applied Molecular Evolution, Gainesville, Florida 32604, USA, Thomas ButlerDepartment of Physics, University of Washington, Seattle, Washington 98195, USA, Massimiliano Di VentraDepartment of Physics, University of California at San Diego, La Jolla, California 92093, USA, Slaven GarajDepartment of Physics, Harvard University, Cambridge, Massachusetts 02138, USA, Andrew HibbsElectronic BioSciences, San Diego, California 92121, USA, Xiaohua HuangDepartment of Bioengineering, University of California at San Diego, La Jolla, California 92093, USA, Stevan B JovanovichMicrochip Biotechnologies Inc., Dublin, California 94568, USA, Predrag S KrsticOak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA, Stuart LindsayDepartments of Physics and Chemistry and the Biodesign Institute, Arizona State University, Tempe, Arizona 85287, USA, Xinsheng Sean LingDepartment of Physics, Brown University, Providence, Rhode Island 02912, USA, Carlos H MastrangeloElectrical Engineering and Computer Science, Case Western Reserve University, Cleveland, Ohio 44106, USA, Amit MellerBiomedical Engineering, Boston University, Boston, Massachusetts 02215, USA, John S OliverNABsys,Inc., Providence, Rhode Island 02906, USA, Yuriy V PershinDepartment of Physics, University of California at San Diego, La Jolla, California 92093, USA, J Michael RamseyDepartment of Chemistry, University of North Carolina, Chapel Hill, North Carolina 27599, USA, Robert RiehnDepartment of Physics, North Carolina State University, Raleigh, North Carolina 27695, USA, Gautam V SoniBiomedical Engineering, Boston University, Boston, Massachusetts 02215, USA, Vincent Tabard- CossaDepartment of Physics and Astronomy, University of British Columbia, Vancouver, British Columbia V6T 1Z1, Canada, Meni WanunuBiomedical Engineering, Boston University, Boston, Massachusetts 02215, USA, Matthew WigginDepartment of Biochemistry, University of British Columbia, Vancouver, British Columbia V6T 1Z3, Canada, and Jeffery A SchlossNational Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland 20892, USAhttps://doi.org/10.1142/9789814287005_0027Cited by:21 PreviousNext AboutSectionsPDF/EPUB ToolsAdd to favoritesDownload CitationsTrack CitationsRecommend to Library ShareShare onFacebookTwitterLinked InRedditEmail Abstract: A nanopore-based device provides single-molecule detection and analytical capabilities that are achieved by electrophoretically driving molecules in solution through a nano-scale pore. The nanopore provides a highly confined space within which single nucleic acid polymers can be analyzed at high throughput by one of a variety of means, and the perfect processivity that can be enforced in a narrow pore ensures that the native order of the nucleobases in a polynucleotide is reflected in the sequence of signals that is detected. Kilobase length polymers (single-stranded genomic DNA or RNA) or small molecules (e.g., nucleosides) can be identified and characterized without amplification or labeling, a unique analytical capability that makes inexpensive, rapid DNA sequencing a possibility. Further research and development to overcome current challenges to nanopore identification of each successive nucleotide in a DNA strand offers the prospect of 'third generation' instruments that will sequence a diploid mammalian genome for ~$1,000 in ~24 h. 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