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A modular architecture for organizing, processing and sharing neurophysiology data

2023; Nature Portfolio; Volume: 20; Issue: 3 Linguagem: Inglês

10.1038/s41592-022-01742-6

1548-7105

Luigi Acerbi, Valeria Aguillon-Rodriguez, Mandana Ahmadi, Jaweria Amjad, Dora E. Angelaki, Jaime Arlandis, Zoe C. Ashwood, Kush Banga, Hailey Barrell, H Bayer, Julius Benson, Brandon Benson, Jai Bhagat, Daniel Birman, Kcénia Bougrova, Julien Boussard, Sebastian A. Bruijns, Matteo Carandini, Joana Catarino, Fanny Cazettes, Yang Dan, Felicia Davatolagh, Peter Dayan, Sophie Denève, Ling Liang Dong, Tatiana A. Engel, Michele Fabbri, Ila Fiete, Charles Findling, Laura Freitas-Silva, Surya Ganguli, Berk Gerçek, Naureen Ghani, Ivan Gordeli, Laura Haetzel, Michael Häusser, Naoki Hiratani, Sonja B. Hofer, Fei Hu, Felix Huber, Cole Hurwitz, Anup Khanal, Christopher Krasniak, Sanjukta Krishnagopal, Michael Krumin, Christopher Langdon, Peter E. Latham, Petrina Lau, Hyun Lee, Ari Liu, Zachary F. Mainen, Hernando Martínez Vergara, Conor Mcgrory, Brenna McMannon, Guido T. Meijer, Maxwell Melin, Leenoy Meshulam, Nathaniel J Miska, Catalin Mitelut, Zeinab Mohammadi, Thomas D. Mrsic‐Flogel, Masayoshi Murakami, Jean‐Paul Noel, Kai Nylund, Alex Pan Vazquez, Liam Paninski, Alberto Pezzotta, Samuel Picard, Jonathan W. Pillow, Alexandre Pouget, Noam Roth, Nicholas Roy, Kamron Saniee, Rylan Schaeffer, Yan-Liang Shi, Karolina Socha, Cristian Soitu, Karel Svoboda, Marsa Taheri, Charline Tessereau, Anne E. Urai, Erdem. Varol, Miles Wells, Matthew R Whiteway, Charles Windolf, Ilana B. Witten, Lauren E Wool, Anthony M. Zador, Niccolò Bonacchi, Gaëlle Chapuis, Anne K. Churchland, Eric DeWitt, Mayo Faulkner, Kenneth D. Harris, Julia M. Huntenburg, Max Hunter, Inês C. Laranjeira, Cyrille Rossant, Maho Sasaki, Michael Schartner, Shan Shen, Nicholas A. Steinmetz, Edgar Y. Walker, Steven J. West, Olivier Winter, Miles Wells,

Cognitive Science and Mapping

We describe an architecture for organizing, integrating and sharing neurophysiology data within a single laboratory or across a group of collaborators. It comprises a database linking data files to metadata and electronic laboratory notes; a module collecting data from multiple laboratories into one location; a protocol for searching and sharing data and a module for automatic analyses that populates a website. These modules can be used together or individually, by single laboratories or worldwide collaborations. A modular architecture for managing and sharing electrophysiology, behavior, colony management and other data has been built to support individual laboratories or large consortia.