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BIBTEX RIS

ViralFlow v1.0—a computational workflow for streamlining viral genomic surveillance

2024; Oxford University Press; Volume: 6; Issue: 2 Linguagem: Inglês

10.1093/nargab/lqae056

ISSN

2631-9268

Autores

Alexandre Freitas da Silva, Antônio Marinho da Silva Neto, Cleber Furtado Aksenen, Pedro Miguel Carneiro Jerônimo, Filipe Zimmer Dezordi, Suzana Porto Almeida, Hudson Marques Paula Costa, Richard Steiner Salvato, Túlio de Lima Campos, Gabriel Luz Wallau, on behalf of the Fiocruz Genomic Network,

Tópico(s)

Influenza Virus Research Studies

Resumo

Abstract ViralFlow v1.0 is a computational workflow developed for viral genomic surveillance. Several key changes turned ViralFlow into a general-purpose reference-based genome assembler for all viruses with an available reference genome. New virus-agnostic modules were implemented to further study nucleotide and amino acid mutations. ViralFlow v1.0 runs on a broad range of computational infrastructures, from laptop computers to high-performance computing (HPC) environments, and generates standard and well-formatted outputs suited for both public health reporting and scientific problem-solving. ViralFlow v1.0 is available at: https://viralflow.github.io/index-en.html.

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